Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01519 ATGGAGCAGAAGCACGTTCTGTTGTCAGCATTGAGTGTCGGGGTTGGGGTGGGTGTGGGGCTTGGGTTGAGCTCAGGGCAGAAATGGGTTGGCGGGAACCGTGACTCTGATGAGCTTTCTGTGGAGCAGATTGTGCAGGAGCTCAAGAATCTGGTGGTTGAAGGAAGGGACGGCAACGTTACATTTGAGGACTTTCCTTATTACTTGAGTGAAAGAACTCAAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTCACTTTTCCAAGCACACCAGGAACCTCCCACCAGCAAGCAGGGCTATTTTGCTATCTGGTCCAGCAGAACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGTTGCAGAATAAATTTGGATGTTCTAGAAAAGAACCATCTTTCAAAAGGTCAATATCCGAGGCGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTTTCTTCAACAGGAGAAACGAGAGgaattctgcgtcaacaaagcagtgcttctgtaagttcCAATCCTCCAAAGCTTAGGAGGAATGCCTCTGCTTCATATGATATAAGTAGCACTTCTTCCCAATGTGGTCCAACATTTCCAGCTCCTTTAAAGCACACAAGTAGTTTGTGTTTTGATGAAAAGCTCTTTGTACAGTCACTTTACAAGCTTTTGGTTTCTATCACAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCATTCTCCAATCACCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGCTCGGTGTTGATACTTGGTTCCCAGATATTAGATTCAGAAGATGATTGCAAAGAAGTTGATGAAAGGCTCACTGTACTATTCCCCTACAACATTGAGATCAAAGCTCCCGAAGATGAAACTCATCTTGGCTGCTGGAAAGGCCAACTGGAAAAGGATATGAAAGATATTCAGTTCCAAGATAATAGAAACCATATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGACTTGAACTCAATCTGCCATGCAGACACTATCTTACTCAGTAATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGtttgtcCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCAATAACGAAGAAAGATGGCGAAAATCCTATACCTGCAAaagtggaagttcctgacaacgagtttgagaagcgcataagaccagaggttatccctgcaaatGAGATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCAACCATCACATCAAAATGGTTTGGAGAGGATGAAAAGAATGTCCGAGCTCTGTTCACACTGGCAGCTAAGGTTGCCCCAACAATTATCTTTGTTGACGAGGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTAAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGgacatggaaaagaagaaaagagaagcagaaggccaaagttctgaagatgcttcaaacaataaagataaggaagaaaaagaaattaccctgaggcctttaaacatggaagacatgagacaggctaagactcaggtggctgcaagttttgcatcagaaggatctgtaatgaatgagttgaagcactggaatgatttgtatggtgaaggaggttcaaggaagaaacaacagctcacttacttcctttaa 2454 0.3541 MEQKHVLLSALSVGVGVGVGLGLSSGQKWVGGNRDSDELSVEQIVQELKNLVVEGRDGNVTFEDFPYYLSERTQVLLTSAAYVHLKHLHFSKHTRNLPPASRAILLSGPAEPYQQMLAKALAHYFESKLLLLDITDFSVKLQNKFGCSRKEPSFKRSISEATLERMSGLFGSFSMLSSTGETRGILRQQSSASVSSNPPKLRRNASASYDISSTSSQCGPTFPAPLKHTSSLCFDEKLFVQSLYKLLVSITETGSIILYIRDVEKLILQSPRLYNLLQKMIKKLSGSVLILGSQILDSEDDCKEVDERLTVLFPYNIEIKAPEDETHLGCWKGQLEKDMKDIQFQDNRNHIAEVLAANDIDCDDLNSICHADTILLSNYIEEIVVSALSYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENSGEDITGAKNEMKCDNQAPENKSETEKSIPITKKDGENPIPAKVEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRILVGLPSVENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERMKDMEKKKREAEGQSSEDASNNKDKEEKEITLRPLNMEDMRQAKTQVAASFASEGSVMNELKHWNDLYGEGGSRKKQQLTYFL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01519 817 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Gma16g01519 817 Pfam AAA+ lid domain 696 740 IPR041569 -
Gma16g01519 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 743 IPR027417 -
Gma16g01519 817 CDD AAA 542 675 - -
Gma16g01519 817 Coils Coil 728 748 - -
Gma16g01519 817 MobiDBLite consensus disorder prediction 735 773 - -
Gma16g01519 817 Gene3D - 676 746 - -
Gma16g01519 817 MobiDBLite consensus disorder prediction 735 769 - -
Gma16g01519 817 Gene3D - 503 675 IPR027417 -
Gma16g01519 817 SMART AAA_5 540 677 IPR003593 -
Gma16g01519 817 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 817 - -
Gma16g01519 817 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 817 - -
Gma16g01519 817 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Gma16g01519 817 MobiDBLite consensus disorder prediction 434 479 - -
Gma16g01519 817 MobiDBLite consensus disorder prediction 422 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01519 Gma-Chr16 35080779 35088291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01519 470 735 Calmodulin-binding Proteins AT3G56690 37.091 2.19e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01519 - - gmx:100817952 1558.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01519 16 35080779 35088291 Gma10g02180 10 49392808 49399801 PCT
Gma16g01519 16 35080779 35088291 Gma20g01537 20 42380938 42391921 PCT