Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01511 ATGGAGGATTTTTGGAGCATGTTTTGCGGAGAATCTGATTGTCCTGGAACCGGAGGAAAGCCACCTTTCTGTTATGATTTCAAGTTTTTGAAAGATCCTTCTACATGCACCAACCAGTTCTTGATCATTTGCTTTGATTTGCTACTACTGATCATGCTGGCATTCATTTTGATCCAGAATTCTTTGTTCAGACCATTTCGGGGTCATCAGTTTGGGCTGGCAAGATTTTCAAACTTGCAGCTAATTTCTGCCATAATCAATGGATCTTTGGGGTTGTTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGAAGAGTCTCACTCTTATTCCTCTTGATTTGTGGTTGCTCGAACTTTTTCAAGGATTCAGATGGTTGTTAGTAGGCTTGAGTGTAAGTCTTCAGTTTAAACAGCTTCCAAGGTCATGGTTGTGGTTGTTTTCTCTTCTTACATTATTTTTTTCTACTGTTTTCTGTGTTCTATCCATGTCCTATGCAATAAGTAGCAGAGAATTGTCCTTTAAGGAAGCTTTAGGTGTTCTGTCTTTTCCAGGGTCAGTTTTACTACTCTTGTGCACTTATAAAGCGTATAAATGTGAAGACACTGACGGGGAAATTGATGAAGGCCTTTATGACCCTTTAAATGGTCACTTTAATGAAGTTGATCCTGATAACTACGTAACTCCTTTTGCCAAAGCTGGATTCTTTAGTAGGATGTCGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGCAAAGAGAAAACACTTCAGGACAAGGATATCCCAAAGTTGCGTGAATCAGATCGAGCAGAAAGTTGCTATTTGTCATTTTTAGAACAATTGAACAGAGAAAAGGGAAAAGAACCATTATCACAATCATCAGTTTTGTGGACTATTGTTTTCTGCCACAGGAGAGAGATTTTGATGACTGGATTGTTTGCATTGCTCAAGGTACTCACCTTGTCTACTGGTCCTGTACTTCTGAATGCATTTATATTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAGGGTTATGTATTGGTCATATCACTTTTCATTATAAAGATCATAGAGTCTCTGTCACAAAGGCAGTGGTATTTCCGCAGTAGGCTTGTTGGGATGAAAGTTAGGTCACTACTTACAGCAGCAATTTATAAAAAACTATTGAGGTTATCTAGTGCAGCTAGATTGACACATTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATATTGGTTTCACCAGTCGTGGACGACAAGCCTTCAAATATGTATTGCATTGTTGATACTTTTTAATGCTATTGGGGTGGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACAGTGCTTTGCAATGCTCCACTGGCAAAGTTGCAGCATAAGTTTCAGAGTGAACTCATGGTGGCACAAGATGAGAGATTGAAGGCCAGTACTGAGGCTCTTACGAATATGAAAGTCCTGAAGCTGTATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAGACTAAGAAATTTGGAACTGAAATTGCTAAGTTCCGTGCAATTGAGAAAGGCATACAACATCTTTCTATTTTGGACCTCACCTATTTTGGTCTCTGCTGCTTCTTTTGGAACATGTTACTTCTTGAACATTCCTTTGCGTGCAAATAACCTTTTCACATTTGTGGCAACTATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTGCCCGGATCGTTAAATTCCTTGAGGCACCTGAATTGCAAAGTGAAAATTTCCGGAATAGAAGTTTTGATGAAAGTAATAAAAGCCCAATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGCATCAAAGTCCACACTGAGGAACATAAACTTGGAGATTAGACACGGGCAAAAGTTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAGCTACAATTCTTGGAGAAGTTCCAATGATAAAGGGAACTAttgaagtttatggaaagtttgcgtatgtttctcaaacagcatggatacagactggtactatacaggaaaatattttgtttggatctgatttggatgctcatagatatcaagaaacacttcgtagatcttcgctactgaaggacctggagctgtttccccatggagatctcactgaaataggtgagaggggagttaacttgagtggaggtcagaagcagcgaattcaacttgctcgtgcactttatcagaatgctgatgtatatctcttggatgatccatttagtgctgttgatgcacatactgccactaatctgtttaatGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTTGACTTTCTTCCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGAAAATCCTAGAAGCTGCTCCTTATCATCATTTGTTGTCCTCAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCCGGTTCTGACAAGCCTATGAATGTTACTTCTTCCAAGAGACGTTCGACATCTGTTAGAGAGATTACACAAGCTTTCAAGGAGAAACATTTAAAAGAAGCAAATGGAGATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCTTACATGCAGTATTTGAATCAGACGAAAGGCTACATATACTTCTTTGTGGCTTCTCTTTGTCATCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATTCCCAAGTCAGCACATTGAGGTTGATTGTAGTTTACTTCTTGATCGGGGCTATTTCTACAATATTCTTGTTGATCAGAACTCTACTTATTGTTGCCTTGGGTATTCAATCATCAACAAATTTATTTTTACTGTTAATGAACTCCCTTTTTCGTGCTCCGATGTCCTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGAGTCTCATCAGATCTAAGCATTATGGATCTTGATGTCCCATTTATCATCGCTTATACTGTGGGAGGTACTACAAACTTCTATTCTAATCTCGCAGTTTTAGCAATTATCACTTGGCAAATCTTGCTTGTCTGTGTACCAATGGTTTACATTACAATACGCTTGCAGAGGTACTATTTTTCCACTGCAAAAGAAGTGATGCGCATGAATGGCACAACAAAATCCATCGTAGCTAATCATGTAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGACATCAATGCTAGTCCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAATAATTAGTGCAATACTTCTTTCTTCCACAGCACTATGCATGGTTATGCTTCCACCCGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTCTCTTATGGTCTTTCACTAAATGCTCAGCTAGTATTTTCAATTCAAAGTCAATGCAATCTTGCAAATTACATAATCTCTGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCAAAGAAGTAATTGAAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAGCTAAATGACTTGAAGATACGATACAGGCTCGATGGAccacttatactccatggaatcacatgcacattcaaagcaggacacaagattggaattgttggaaggacaggcagtggaaagtccactcttatcagtgctttatttcgtctagtggagccggcaggtggaaaaattgtagtcgatggcgtagacatatcttctatcggccttcatgatttgaggtcacgttttggtgttatacctcaggatcctaccctttttaatgggactgttaggtataatttggaccctttagctcaacactctgatcacgagatatgggaggttcttgggaagtgtcagttgcgagaagccgtccaagagaaacaagagggcctgaactcctcagttgttgaagatggatcaaactggagcatgggacaaaggcaattgttttgtttggggcgtgctcttttaaggagaagtaggatattggtgctggatgaagcaactgcatcaattgacaatgcaactgatttgattctgcagaaaaccattaggactgagtttgcagattgcacagtgatcacagtagcacacaggataccaaccgtgatggattgcactatggttctctcaatcaGCGATGGAAAGTTGGTGGAGTATGATGAACCAACGAGCTTGATGAAGAAAGAAGGATCGCTATTCAAGCAGCTTGTCAAGGAGTACTGGTCTCATTTTCAATCTGCAGAATCACATTGA 4446 0.3111 MEDFWSMFCGESDCPGTGGKPPFCYDFKFLKDPSTCTNQFLIICFDLLLLIMLAFILIQNSLFRPFRGHQFGLARFSNLQLISAIINGSLGLLHLCLGIWVLEEKLRKSLTLIPLDLWLLELFQGFRWLLVGLSVSLQFKQLPRSWLWLFSLLTLFFSTVFCVLSMSYAISSRELSFKEALGVLSFPGSVLLLLCTYKAYKCEDTDGEIDEGLYDPLNGHFNEVDPDNYVTPFAKAGFFSRMSFWWLNPLMKRGKEKTLQDKDIPKLRESDRAESCYLSFLEQLNREKGKEPLSQSSVLWTIVFCHRREILMTGLFALLKVLTLSTGPVLLNAFILVSEGNESFKYEGYVLVISLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIALLILFNAIGVATIASLVVIVLTVLCNAPLAKLQHKFQSELMVAQDERLKASTEALTNMKVLKLYAWETHFKNAIERLRNLELKLLSSVQLRKAYNIFLFWTSPILVSAASFGTCYFLNIPLRANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEAPELQSENFRNRSFDESNKSPISIKSADFSWEGNASKSTLRNINLEIRHGQKLAICGEVGSGKSTLLATILGEVPMIKGTIEVYGKFAYVSQTAWIQTGTIQENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGKILEAAPYHHLLSSSQEFQDLVNAHKKTAGSDKPMNVTSSKRRSTSVREITQAFKEKHLKEANGDQLIKEEEREIGDTGLKPYMQYLNQTKGYIYFFVASLCHLLFVICQILQNSWMAANVDNSQVSTLRLIVVYFLIGAISTIFLLIRTLLIVALGIQSSTNLFLLLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDVPFIIAYTVGGTTNFYSNLAVLAIITWQILLVCVPMVYITIRLQRYYFSTAKEVMRMNGTTKSIVANHVAETTAGVVTIRAFEEEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIISAILLSSTALCMVMLPPGTFSSGFIGMALSYGLSLNAQLVFSIQSQCNLANYIISVERLNQYMHIPSEAKEVIEGNRPPSNWPVAGKVELNDLKIRYRLDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGVDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLAQHSDHEIWEVLGKCQLREAVQEKQEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPTSLMKKEGSLFKQLVKEYWSHFQSAESH 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01511 1481 CDD ABCC_MRP_domain1 626 826 - -
Gma16g01511 1481 Gene3D ABC transporter type 1, transmembrane domain 882 1217 IPR036640 GO:0005524|GO:0016021
Gma16g01511 1481 Gene3D ABC transporter type 1, transmembrane domain 282 608 IPR036640 GO:0005524|GO:0016021
Gma16g01511 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 849 IPR003439 GO:0005524
Gma16g01511 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 922 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01511 1481 SUPERFAMILY ABC transporter transmembrane region 918 1215 IPR036640 GO:0005524|GO:0016021
Gma16g01511 1481 CDD ABCC_MRP_domain2 1233 1453 - -
Gma16g01511 1481 CDD ABC_6TM_ABCC_D2 921 1210 IPR044726 GO:0140359
Gma16g01511 1481 Gene3D - 1218 1471 IPR027417 -
Gma16g01511 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 849 IPR027417 -
Gma16g01511 1481 SMART AAA_5 653 826 IPR003593 -
Gma16g01511 1481 SMART AAA_5 1261 1453 IPR003593 -
Gma16g01511 1481 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Gma16g01511 1481 CDD ABC_6TM_ABCC_D1 313 599 IPR044746 GO:0140359
Gma16g01511 1481 Pfam ABC transporter 1252 1400 IPR003439 GO:0005524
Gma16g01511 1481 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Gma16g01511 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01511 1481 SUPERFAMILY ABC transporter transmembrane region 299 604 IPR036640 GO:0005524|GO:0016021
Gma16g01511 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Gma16g01511 1481 Pfam ABC transporter transmembrane region 311 577 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01511 1481 Pfam ABC transporter transmembrane region 919 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01511 1481 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 72 1481 - -
Gma16g01511 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 72 1481 - -
Gma16g01511 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1467 IPR027417 -
Gma16g01511 1481 Gene3D - 624 857 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01511 Gma-Chr16 34980351 34986327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01511 626 873 Calmodulin-binding Proteins AT2G36910 29.057 4.72e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01511 K05666 - gmx:100787314 2870.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01511 16 34980351 34986327 Gma10g02166 10 49218403 49224663 PCT
Gma10g02166 10 49218403 49224663 Gma16g01511 16 34980351 34986327 PCT