Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01510 ATGGAGAATTTTTGGAGCATGATTTGTGGGGATTCTAGTTGTTCTGAGAGTGGAAGAAAGACTTTCTGTTATGATTTCAATCTTTTGGGAGATCCTTCCAAATGCTTCAACCATTTGTTGGTCATTTGCTTTGATGTGTTACTACTTATCATGCTGTCACTTAACATGATCCGCAAGTCTTCATCGAGACCATTTTGGCCTCTAATCCGAATGCAAAGTTATTCAAACTTGCAGCTAGTATCTGCCATAATCAATGGTACTCTTGGCGTGTTGCATTTGTGTTTAGGCATTTGGATTTTAGGGGAAAAGTTAAGGAAAACACACACTGTTTTTCCTCTTAATTGGTGGCTATCAGAACTCTTTCAGGGATTCACATGGTTGTTAGTAGGTATAATCGTTAGTCTTCACTTGAAAAAACTAACAAGAGTATGGTTGTGGTTATTTTCTATTCTTATATTCTCCGTTTTTGGTATTTTATGTGCTTTATCCATGTCTTATGCAATTAGAAGAAGAGAATTGTCCCTCAAGGCTACTTTAGATGTTTTATCATTTCCAGGAGCAATTTTACTGCTCTTATGCATATACAAAATATGGAAATGTGAAGATACTAATGAAGAAATTGATGAAGGTCTTTATGCTCCTTTAAATGGCCAGTTCAATGAAGTGGATCCTATTAGCTATATAACCCCATTTGCCAAAGCTGGATTCTTTAGTAGGATGTCGTTTTGGTGGCTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTGAAGATGAGGATATCCCAAAGTTGCGGGAGTTAGATCGAGCAGAAACTTGTTACCTGATGTTTGTAGAACAATTGAACAGACAGAAACAAAAAGAACCACCATCACAGTCAGTTTTGTGGACAATAATTTTTTGCCACTGGAGAGAGATTTTGATATCAGGGATTTTTGCGTTGCTCAAGGTGCTCTCTCAATCTGCTGGTCCTTTACTTCTAAATGCCTTCATATTGGTTGCTGAAGGTAATGCAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTTTTAATTACAAAGATCATTGAATCCTTATCACAAAGGCAGTGGTATTTCCGCAGTAGACTTATAGGAATGAAGGTTAAGTCACTCCTTTCTACATGCATTTATAAAAAGTTACTGAATTTATCCAATGTAGCGAAATTGACACACTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAACTTCCATTTTGGTTTCACCAGACATGGATTACAAGCATCCAACTATCTATTGCATTAGTAATACTTTATCATGCTATTGGGCTAGCAACAATTGCCTCATTGGTTGTGATAGTTCTCAGTGTGCTTTGCAATACTCCACTAGCAAAGTTACAGCACAAGTTTCAGACAAAACTCATGGTGGCTCAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTGCTAAAACTATATGCGTGGGATACTCATTTTAAAAATGCTATAGAAAAGTTAAGGAATGTGGAACTCAAATTCTTAGCTGCAGTGCAATCAAGAAAGGCATACAATATATTTATCTTTTGGACTGCACCTATTTTGGTCTCTGTTGTTTCTTTTTGGGCATGTTACTTCCTGAATATTCCTTTACATGCAAATAATGTTTTCACTTTTGTGGCTACTTTACGCCTTGTGCAAGAGCCAATTACAGCCATCCCAGATGTTGTTGGGGCTGTCATTCAAGCAAAAGTTGCTTTTGCCCGGATTGTTAAATTCCTCCAAGCACCTGAACTGCAAAGTGAAAAATTCCAAAACAGGGGTTTTGATGATAGTATTCGAGGCTCAATTTTAATCAAATCTGCTGACTTTTCATGGGAAGGTACTGCATCAAAACCTACATTGAGGAACATAACCATGGAGGTTAAACACACGCAAAAGGTGGCCATTTGCGGAGAAGTTGGCTCTGGAAAATCAACCCTCTTGGCAACAATTCTCGGAGAAGTGCCTAAAACAAAGGGAACTattgaagtttatggaaagttttcatatgtttctcaaacaccatggatacaaacaggtactatacgggaaaatattttatttggatctgatttggatgctcaaagatatcaagaaacacttcgtagatcttcactattgaaggacctcgagctgtttccccatggagatctcactgaaataggtgagaggggagttaacttgagtggaggtcagaagcagcgaattcaacttgcacgtgcactttatcagaatgctgatgtatatctgctggatgatccattcagtgctgttgatgcacatactgcaacaaatttgtttaatGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTTGTAACTCATCAAGTTGACTTTCTACCAGCATTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTTGAAGCTTCTCCATATCATCATTTGTTGTCCTCAAACCAAGAATTCCAAGATCTTGTTAATGCTCACAAGGAAACTGCAGGTTCTGACAAGCCTATGCATGTTACTTCTACCCAGAGACACTCAACTTCTGCCAGAGAGATTACACAAGCTTTTGTGGAGAACTTCAAAGCCACAAATGGGAATCAGTTGATAAAGAGAGAAGAGAGAGAGATAGGAGACACGGGGTTGAAGCCTTACTTACAGTATTTGAACCAAACGAAAGGATACATATACTTTTTTTTGGCTTCTCTTAGTCACCTCATGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATTTCCAAGTCAGCACTTTGCGGTTGATTGTAGTTTACTTCTTAATTGGGGCTATTTCTACAATTTTCTTGTTGACCAGAACTCTACTTGTAGTTTACATGGGTATTCAGTCATCAACATATTTATTTTTTCAGTTAATGAACTCCCTTTTTCGTGCACCAATGTCCTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGAGTCTCATCAGATCTAAGCATTGTGGATCTTGATATACCCTTTATTCTCAGTTTCACTGTGGTAGGTGTTATATACTTCTATTCTAATCTGGCAGTCCTAGCTATTATTTCTTGGCAAGTCTTGGTTATCGCCATACCAATGGTATATCTTTCAATTCGCCTGCAGAGATACTACTTTTCCACTGCAAAAGAAGTGATGCGCGTGAATGGCACAACAAAATCCTTTGTAGCTAATCATATAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGACAGCAATGCTAGTCCTTTCTTCCATAGTTTTAGCTCAAATGAGTGGCTGATCCAAAGATTAGAAATAGTTAGTGCAGTACTGCTTTCCTCCGCAGCACTATGCATGGTTATGCTTCCACCAGAGACTTTCAGCTCTGGATTTCTTGGCTTGTCTCTCTCTTATGGCTTTACACTAAATGCTTCCTTACAATTTTTAATTCAAAGCCAATGCAGTCTAGAAAATTACATAATATCTGTAGAGAGGCTAAATCAATATATGCATATACCTGGTGAGGCCCAAGAAGTAATAGAAGGAAATCGTCCTCCCTCGAATTGGCCAGTTGCTGGTAAAGTAGAACTAAATGACTTGCAGATACGATACAGGCCTGATGGAccacttgtacttcatggaatcacatgcacattcaaagcagggcacaagattggaattgttggcaggacaggcagtgggaagtccactcttataggcgctttatttcgtcttgtggagccagcaggtggaaaaattgtagtcgatggcgtagatatatcttctattggtcttcatgatttgaggtcacgttttggtgttatacctcaggatcctaccctttttaatgggactgttagatataatttggaccctttatctcaacactctgatcacgagatatgggaggttcttgggaagtgtcaattgcgagaagctgtccaagagaaagaagagggcctgaactccccagttgttgaagatggatcaaactggagcatgggacaaaggcaattattttgtttggggcgtgttcttttaaggagaagtaggatattggtgctggatgaagcaactgcatcaattgacaatgcaactgatttgattctgcagaagaccattaggactgagtttgcagattgtacagtgatcacagtagcacacaggataccaaccgtgatggattgcactatggttctttcaatcagagatgGAAAATTGGTGGAGTATGATGATCCAATGTGCCTGATGAAGAAAGAAGGATCGCTATTCAATCAGCTTGTTAATGAATACTGGTCTCATTTTCAATCTGCAGAATCACATTGA 4434 0.3022 MENFWSMICGDSSCSESGRKTFCYDFNLLGDPSKCFNHLLVICFDVLLLIMLSLNMIRKSSSRPFWPLIRMQSYSNLQLVSAIINGTLGVLHLCLGIWILGEKLRKTHTVFPLNWWLSELFQGFTWLLVGIIVSLHLKKLTRVWLWLFSILIFSVFGILCALSMSYAIRRRELSLKATLDVLSFPGAILLLLCIYKIWKCEDTNEEIDEGLYAPLNGQFNEVDPISYITPFAKAGFFSRMSFWWLNPLMKRGQEKTLEDEDIPKLRELDRAETCYLMFVEQLNRQKQKEPPSQSVLWTIIFCHWREILISGIFALLKVLSQSAGPLLLNAFILVAEGNASFKYEGYVLAISLLITKIIESLSQRQWYFRSRLIGMKVKSLLSTCIYKKLLNLSNVAKLTHSSGEIMNYVTVDAYRIGELPFWFHQTWITSIQLSIALVILYHAIGLATIASLVVIVLSVLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWDTHFKNAIEKLRNVELKFLAAVQSRKAYNIFIFWTAPILVSVVSFWACYFLNIPLHANNVFTFVATLRLVQEPITAIPDVVGAVIQAKVAFARIVKFLQAPELQSEKFQNRGFDDSIRGSILIKSADFSWEGTASKPTLRNITMEVKHTQKVAICGEVGSGKSTLLATILGEVPKTKGTIEVYGKFSYVSQTPWIQTGTIRENILFGSDLDAQRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGEILEASPYHHLLSSNQEFQDLVNAHKETAGSDKPMHVTSTQRHSTSAREITQAFVENFKATNGNQLIKREEREIGDTGLKPYLQYLNQTKGYIYFFLASLSHLMFVICQILQNSWMAANVDNFQVSTLRLIVVYFLIGAISTIFLLTRTLLVVYMGIQSSTYLFFQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFILSFTVVGVIYFYSNLAVLAIISWQVLVIAIPMVYLSIRLQRYYFSTAKEVMRVNGTTKSFVANHIAETTAGVVTIRAFEEEDRFFEKNLDLIDSNASPFFHSFSSNEWLIQRLEIVSAVLLSSAALCMVMLPPETFSSGFLGLSLSYGFTLNASLQFLIQSQCSLENYIISVERLNQYMHIPGEAQEVIEGNRPPSNWPVAGKVELNDLQIRYRPDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGVDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHSDHEIWEVLGKCQLREAVQEKEEGLNSPVVEDGSNWSMGQRQLFCLGRVLLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSIRDGKLVEYDDPMCLMKKEGSLFNQLVNEYWSHFQSAESH 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01510 1477 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Gma16g01510 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01510 1477 Pfam ABC transporter transmembrane region 915 1153 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01510 1477 Pfam ABC transporter transmembrane region 308 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01510 1477 CDD ABCC_MRP_domain2 1229 1449 - -
Gma16g01510 1477 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Gma16g01510 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 846 IPR003439 GO:0005524
Gma16g01510 1477 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 72 1477 - -
Gma16g01510 1477 CDD ABCC_MRP_domain1 623 823 - -
Gma16g01510 1477 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Gma16g01510 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1465 IPR003439 GO:0005524
Gma16g01510 1477 SUPERFAMILY ABC transporter transmembrane region 913 1211 IPR036640 GO:0005524|GO:0016021
Gma16g01510 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma16g01510 1477 SUPERFAMILY ABC transporter transmembrane region 296 596 IPR036640 GO:0005524|GO:0016021
Gma16g01510 1477 Gene3D - 1214 1466 IPR027417 -
Gma16g01510 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 846 IPR027417 -
Gma16g01510 1477 SMART AAA_5 650 823 IPR003593 -
Gma16g01510 1477 SMART AAA_5 1257 1449 IPR003593 -
Gma16g01510 1477 Pfam ABC transporter 1248 1396 IPR003439 GO:0005524
Gma16g01510 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1221 1463 IPR027417 -
Gma16g01510 1477 CDD ABC_6TM_ABCC_D2 913 1206 IPR044726 GO:0140359
Gma16g01510 1477 Gene3D - 618 852 IPR027417 -
Gma16g01510 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 72 1477 - -
Gma16g01510 1477 Gene3D ABC transporter type 1, transmembrane domain 878 1213 IPR036640 GO:0005524|GO:0016021
Gma16g01510 1477 Gene3D ABC transporter type 1, transmembrane domain 280 605 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01510 Gma-Chr16 34953825 34975870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01510 617 874 Calmodulin-binding Proteins AT2G36910 30.108 5.92e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01510 K05666 - gmx:100786761 2612.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01510 16 34953825 34975870 Gma10g02165 10 49206867 49213858 PCT
Gma16g01510 16 34953825 34975870 Gma20g01546 20 42485483 42491710 PCT
Gma10g02165 10 49206867 49213858 Gma16g01510 16 34953825 34975870 PCT
Gma20g01546 20 42485483 42491710 Gma16g01510 16 34953825 34975870 PCT