Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01507 ATGGCAAAGGTAAGAGATCAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATCTCCATGGACGTGATGCGCTCTCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCACTGGCTCGACTCAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTCCACCGCCTCATCCGCCTCTGGCTCCTCTCCTcctcctcctcctcctccgccgaacctccctccccctcctcctccgccgaccacctccgccctctcctccgccAAATCCAAACCTCCGACGACAACGTCCCCGGTATTCTCTCCAAAATCGCCGAATTCGCCAAGAAATCCGGTGAGAATCGCCGGTCTCTCGCCGCCTTCCCCGGCTTCGACTCCGCCGTGGTCCGCGCGCTCGCCGGAAGCAATTCACTCATCGACGTGGCGGAAAACGCGATCTATCTTCTCGGTTCAGTTTTCCGAGAAAACGGAAAGTCAACTGGAGAGAGAATTCGAAAGCTGATTCTTGACGCTCGGGAACAATGCTTTGATGCGATGATATTTGTTCTCAGAAACGGATCTCTGAAATCAAAGATTGAAACGGTTAAGGTTTTGGAGTTTCTCGCGTGCGATTTTCAATCTTCCAAATCGATCAGCGAAGCATGCGGATTGCTGTCGTTGCTCGCGAGTTTTTTAAAGGACGGCGGAGAGGAGATAAACGACGCCGTTTTGTCGCTGCTCGGCGTCGTTTCGGTTACTCACTCCGCGAAGGTGGAACTCGTTAGCTCCGGAGTTGTTGAAGTGGTTACGAAATTGCTGCGAGCGTGTTCGGCGGCGACGGCGGAGAGGTGTTTGAGAATGCTGGCGGTGTTGGCCACGTGCGCGGAGGGTCGGGCGGCGATGGCGGAGGAGCCGTCGTGTGCTGCGGCGGTGGTGGAGAGAATTACGAAGGCGTCAAAGGCTGCGGCGGCGGACGCGGTGGCGGTGCTGTGGAGCTTGTGCTGTTTGTGCAGGAACGTGAAGGTGAGAGATGAGGTGGCAAAGCGAAACGGCGTCGTGGTGGTTTTGTTGGTTATGCAGAGGGGGTGGGAGGAGCACGTGAGAAGCATGTGCGTGGATTTGATTAAGGGTTTTTTCAAGCCATGGCGGACGGCTACTGGAACCGGCAACAGGCGTTTCTGCCTCACTCCGGCATGCTCAAACGGCCGCGTTCCGACTACGATATGCCTGCTTCCGGTCTGTCTTTCAGGTAATGAGATGCATAATCATGTTGCTCGTGATGATGACCGTACTGGTCACCGAATGCTAAAGGACACACAAACAATTGGATCTGCTTATGACCACTACCTTCAGAGTGGGCAACTTTCTTCATTTACTTCTGGGGAAGTCAGTGCAGTTGGTGGTCTTGGGTTGGCTAGGGGTGGTGGTGGTGGATTATCAGGCCATTCACTAGCTGATCCTGCTGTCATGGGGCGTCATGGGGGTGGTGGTTCAGATCTAGCGCCAAATGGACGGGGTGTTAATTATGGTGGTCAGCTACCAGTAGATGCGGTTTCCAGACCTGGACCTGAGACAGGATCTCTACCTCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCTTCTGATAGCACCAGAAGGGAAGTAGCTCATATTTTCCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACATCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACCGCTATGAGTGCCTTGCAAGGTTATAAAGTTGATGAACTCAATCCCGAGTCCAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGCAGTAAAAGATGA 1935 0.5101 MAKVRDQKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQHWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSSSSSSSAEPPSPSSSADHLRPLLRQIQTSDDNVPGILSKIAEFAKKSGENRRSLAAFPGFDSAVVRALAGSNSLIDVAENAIYLLGSVFRENGKSTGERIRKLILDAREQCFDAMIFVLRNGSLKSKIETVKVLEFLACDFQSSKSISEACGLLSLLASFLKDGGEEINDAVLSLLGVVSVTHSAKVELVSSGVVEVVTKLLRACSAATAERCLRMLAVLATCAEGRAAMAEEPSCAAAVVERITKASKAAAADAVAVLWSLCCLCRNVKVRDEVAKRNGVVVVLLVMQRGWEEHVRSMCVDLIKGFFKPWRTATGTGNRRFCLTPACSNGRVPTTICLLPVCLSGNEMHNHVARDDDRTGHRMLKDTQTIGSAYDHYLQSGQLSSFTSGEVSAVGGLGLARGGGGGLSGHSLADPAVMGRHGGGGSDLAPNGRGVNYGGQLPVDAVSRPGPETGSLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPHYLCFVDFANPACAATAMSALQGYKVDELNPESSHLRLQFSRYPGPRSGPAFRSKR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01507 644 CDD RING-Ubox_PUB 17 59 IPR045210 -
Gma16g01507 644 SMART rrm1_1 546 620 IPR000504 GO:0003723
Gma16g01507 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 615 IPR000504 GO:0003723
Gma16g01507 644 SUPERFAMILY ARM repeat 79 386 IPR016024 -
Gma16g01507 644 Gene3D - 541 631 IPR012677 -
Gma16g01507 644 Pfam U-box domain 13 83 IPR003613 GO:0004842|GO:0016567
Gma16g01507 644 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Gma16g01507 644 Gene3D - 81 387 IPR011989 -
Gma16g01507 644 CDD RRM_RBPMS_like 545 627 - -
Gma16g01507 644 SUPERFAMILY RING/U-box 9 82 - -
Gma16g01507 644 SUPERFAMILY RNA-binding domain, RBD 521 635 IPR035979 GO:0003676
Gma16g01507 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 631 IPR000504 GO:0003723
Gma16g01507 644 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Gma16g01507 644 PANTHER WDSAM1 PROTEIN 7 393 IPR045185 GO:0061630
Gma16g01507 644 MobiDBLite consensus disorder prediction 494 546 - -
Gma16g01507 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 80 IPR013083 -
Gma16g01507 644 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01507 Gma-Chr16 34664332 34671787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01507 4 389 U-box Gene Family AT5G09800 37.468 9.12e-73 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01507 - - gmx:100786235 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01507 16 34664332 34671787 Gma02g00754 02 7342137 7346017 GST
Gma16g01507 16 34664332 34671787 Gma10g02160 10 49138114 49143855 PCT
Gma16g01507 16 34664332 34671787 Gma20g01556 20 42567633 42572948 PCT
Gma10g02160 10 49138114 49143855 Gma16g01507 16 34664332 34671787 PCT
Gma20g01556 20 42567633 42572948 Gma16g01507 16 34664332 34671787 PCT