Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01500 ATGTCATCAAATCAAGCATCCCTTAACCTTAACCAAGCCAAATTTGCCCTTCCAACCAATGACGACCTTGAGCAACAACAACAACAAGCAACAACAACTCTAGAGATTGAATCTGATGAGGACACCTTTGACTACTCAAAAAGATCTCAATGGCTCCGCGCCGCTGTTCTGGGAGCCAATGATGGGTTGGTCTCAACAGCATCAATCATGATGGGTGTTGGAGCAGTGAAGCATGACATCAAGGCCATGATCCTATCAGGGTTTGCAGGGTTGGTGGCAGGGGCATGTAGCATGGCCATAGGTGAGTTTGTGTCTGTTTACTCACAACTAGACATTGAGGTTGCTCAAAGGAAGAGGGAGAAGGAAAGGGGCCAAAGAAGAGTGAGAGATCCAGAGGAAGACACCAATGAAGAGAAAGAGAGTTTGCCAAACCCTTTGCAAGCAGCAGCAGCCTCAGCTTTGGCCTTTTCTGTTGGTGCAATGGTGCCATTGCTTGCAGCGTCATTTATAAGGGAATATAAGGTGAGGCTTGGAGTGATTGTTGCTGCTGTGACTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCTGTGTTGGGTAAGGCTCCAGTGTTGAGGTCTGCTTTGAGGGTCTTGTTTGGGGGTTGGATGGCCATGGCAATCACTTTTGGGTTAACCAAGTTGATTGGATCAAGTGCACTTTAG 702 0.4744 MSSNQASLNLNQAKFALPTNDDLEQQQQQATTTLEIESDEDTFDYSKRSQWLRAAVLGANDGLVSTASIMMGVGAVKHDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKREKERGQRRVRDPEEDTNEEKESLPNPLQAAAASALAFSVGAMVPLLAASFIREYKVRLGVIVAAVTFALVVFGWLGAVLGKAPVLRSALRVLFGGWMAMAITFGLTKLIGSSAL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01500 233 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 24 230 - -
Gma16g01500 233 Pfam VIT family 136 225 IPR008217 GO:0005384|GO:0030026
Gma16g01500 233 Pfam VIT family 52 127 IPR008217 GO:0005384|GO:0030026
Gma16g01500 233 CDD Nodulin-21 50 202 - -
Gma16g01500 233 Coils Coil 20 40 - -
Gma16g01500 233 MobiDBLite consensus disorder prediction 120 140 - -
Gma16g01500 233 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 24 230 IPR008217 GO:0005384|GO:0030026
Gma16g01500 233 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01500 Gma-Chr16 34433848 34434905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01500 33 233 Nodulin-like Gene Family AT3G43660 70.792 2.47e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01500 K22736 - gmx:100807991 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01500 16 34433848 34434905 Gma02g00743 02 7217614 7218788 GST
Gma16g01500 16 34433848 34434905 Gma10g02155 10 49066248 49067326 PCT
Gma16g01500 16 34433848 34434905 Gma20g01560 20 42633247 42634202 PCT
Gma10g02155 10 49066248 49067326 Gma16g01500 16 34433848 34434905 PCT
Gma20g01560 20 42633247 42634202 Gma16g01500 16 34433848 34434905 PCT