Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01495 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGCTCTGGTGATGCAGTGGCAGCACCACCACCTGCTGCATCAGGAGGAGCACATGATGGTGGTGTTGACGGCGGTGACGGTGGCGGTGGCGGATCAAATTCAGGGGATGATAGAGTTGAGGAAGGTGAGAGGAGCTTCGGTGGGAACAGGTGGCCGAAGCAAGAGACTTTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTTAGAGATGCAAGTGTAAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAGCTGGCAGAGCTTGGCTACAACAGAAATGCCAAGAAATGCAAAGAGAAGTTTGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGACGAAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATGGAAAGCAATCTCCAACACCTCCAAAGCCGCCACCACAAACAACAGCACTATCAGCAACACCAGTGTCAATAGTGGTAACAACAACTACAACTACACCATCATCAATAATAATGCCACTTCCATTGCCACCAGTGTCTAATAACAACAACAACACCACTGTTCCATCCACAACATCACTTCCTATGCCTCAAAGCATTCTCAACATAACACCACCATCAACACTGAACATCACAATCCCTTCTTTTCCACCATCAAACCCTACAACATACTTCCCAACACAAACACCAAACCCTACTAGCAACAACAACAACAACCCTCCAAGCACCATCACCCCACCTTCCTTCCCCAATTTCCCCGCCGATCTCTTGTCGAATTCGAGTTCTTCATCGACTTCTTCGGAGGAAACACCGACGACGGAGGCCAGAGGGCGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGGCTCATGAAGGAGGTGATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAGGCCATAGAGAAGAGAGAACAAGAGCGTGTGGTGAGAGAGGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTAGCACAAGAGAGGTCCATTGCCGCAGCAAAAGATGCTGCTGTTATGACATTTTTGCAAAAGATAGCCGAACATCAGCAACAAGAAACTATCAATCTTGAACCAGCATTGAATAACAACAGCATCACTGTTGTTCCACAGCAACCAGTGCCACAAGCAACACCAACATCAACTCCAACACCACAACAAGCACAAACAACAACAGTTCCTGAGGCCCCACAAGTGCAGCCATTGGTCCCACAACTACAACAACAACAACAAATAGTGGTGAGTAATGTGGAAATCAACAAAGCTGATAATAACGGTGAGAATTTGATGATGGAAGCAAGCTCTTCAAGGTGGCCAAAAGTGGAGGTACAAGCACTGATAAACCTGAGGACAAGCTTGGAAACAAAGTACCAAGAAAGTGGACCAAAAGGGCCACTGTGGGAGGAGATCTCAGCGTTGATGAGGAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCTGAAGATTCAAAGACATGTCCCTATTTTCACCAGTTGGAGGCTCTATACAGGGAGAAGAACAAGGGAGAGGGGCAGATGAAGCCGGAGAGCATGATGGCGCCGCTCATGGTGCAGCCGGAGCAACAATGGCCTCCTCAAACAACGCTTGTGGTACCGCCAGAAGTAACCATGGGAGACACCCAGAATGACCCCATGGACCGGCAGTACCATGAGGAGAATGAGGATGACGAGGACGACAAGGAAATTGGAGATGAAGACGAGGATGAGGACGACGAAGGAGGTGATAATTATGAGATAGTTGCGAGCAAACCAGCCACAGCTGATGCTTCCGGAGAGTGA 1968 0.4832 MLGDSAVLGTGGGGSGDAVAAPPPAASGGAHDGGVDGGDGGGGGSNSGDDRVEEGERSFGGNRWPKQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYNRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHGKQSPTPPKPPPQTTALSATPVSIVVTTTTTTPSSIIMPLPLPPVSNNNNNTTVPSTTSLPMPQSILNITPPSTLNITIPSFPPSNPTTYFPTQTPNPTSNNNNNPPSTITPPSFPNFPADLLSNSSSSSTSSEETPTTEARGRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVVREEAWRMQEMQRINREREILAQERSIAAAKDAAVMTFLQKIAEHQQQETINLEPALNNNSITVVPQQPVPQATPTSTPTPQQAQTTTVPEAPQVQPLVPQLQQQQQIVVSNVEINKADNNGENLMMEASSSRWPKVEVQALINLRTSLETKYQESGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYREKNKGEGQMKPESMMAPLMVQPEQQWPPQTTLVVPPEVTMGDTQNDPMDRQYHEENEDDEDDKEIGDEDEDEDDEGGDNYEIVASKPATADASGE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01495 655 SMART sant 60 122 IPR001005 -
Gma16g01495 655 SMART sant 469 531 IPR001005 -
Gma16g01495 655 MobiDBLite consensus disorder prediction 1 67 - -
Gma16g01495 655 ProSiteProfiles Myb-like domain profile. 465 529 IPR001005 -
Gma16g01495 655 MobiDBLite consensus disorder prediction 405 430 - -
Gma16g01495 655 CDD GT1 471 536 - -
Gma16g01495 655 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Gma16g01495 655 Pfam Myb/SANT-like DNA-binding domain 471 558 IPR044822 -
Gma16g01495 655 MobiDBLite consensus disorder prediction 247 263 - -
Gma16g01495 655 CDD GT1 62 127 - -
Gma16g01495 655 MobiDBLite consensus disorder prediction 197 219 - -
Gma16g01495 655 MobiDBLite consensus disorder prediction 153 176 - -
Gma16g01495 655 MobiDBLite consensus disorder prediction 273 292 - -
Gma16g01495 655 Gene3D - 473 534 - -
Gma16g01495 655 Gene3D - 64 125 - -
Gma16g01495 655 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
Gma16g01495 655 MobiDBLite consensus disorder prediction 613 638 - -
Gma16g01495 655 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 646 - -
Gma16g01495 655 Coils Coil 306 337 - -
Gma16g01495 655 PANTHER - 1 646 - -
Gma16g01495 655 MobiDBLite consensus disorder prediction 593 655 - -
Gma16g01495 655 MobiDBLite consensus disorder prediction 232 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01495 Gma-Chr16 34356242 34359871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01495 60 585 Trihelix Transcription Factor Family AT1G76890 47.436 1.91e-143 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma16g01495 Myb_DNA-bind_4 5.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01495 - - gmx:100804788 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01495 16 34356242 34359871 Gma16g01495 16 34356242 34359871 ECH
Gma16g01495 16 34356242 34359871 Gma02g00738 02 7161592 7165566 GST
Gma16g01495 16 34356242 34359871 Gma10g02149 10 49002159 49004993 PCT
Gma16g01495 16 34356242 34359871 Gma20g01565 20 42700743 42703665 PCT
Gma10g02149 10 49002159 49004993 Gma16g01495 16 34356242 34359871 PCT
Gma20g01565 20 42700743 42703665 Gma16g01495 16 34356242 34359871 PCT