Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01494 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATACCCAGCCCGAGATGGCGGTGACGGCAGTAGTCTCGCCACCAGAAGAAGTAGCTCATGATGGCAGCGACAAcagtggtgatggtggcagtggtgatggtggTGGTGGTGAGATGATTGGGATGGACTTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAATAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATACAGTTTTTCGAGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAATTGGCAGAACTTGGATATCAAAGAAGCGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGACAACAAAAGTGGCAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAACAGTCTCTTACCCGCCAAAACCACAACCTACTTCTACTTTGGCAACAACAAACCCATTGACATTGCCAACAAGGCCAAGTGATCATGGTAACAAAGTTATCTCTTATGTCACAACTTTTCCTTCCACAAACCCTACTCTCATTTCACCTTCTCCACAAACCAACACTACCACCACCACCACCACAACAACATCCACAACCAACCCTAGAGATTCATCACGACCACAAACCAACAACAACAATAATAGTGTCACACACTCTTTGCCAAACATGAACACCTCTTTCTCTACCACCACTGCCTCCACCTCATCCTCCACAGCGTCAGATGAAGACTTGGAAGAGAGGTATAGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCTTGTTGAAGCAAGAGGAGATGCAAAAGAAGTTCTTGGAAGCCATGGACCAAAGGGAGAGGGAAAGGGTGGCACAACAAGACAATTGGAGGATGCAAGAAATGGCAAGGATCAATAGGGAGCATGAGATTCTTGTTCAAGAGAGATCAACAGCAGCAGCCAAAGATGCTACAGTCATTGCATTATTGCAAAAGATGTATGGCCAACAAAACCCCACACCACAAGTTGAAGTAGAGCCACCACCACAACAGAAGCAAACAATTCCCCAATCGCAGCCTCCAATATTAATGCCAAACAATAATTTCGAGGTCAAGAAAATAAATAATGGTCacagtgttactagtactactactggtactgttgctactgctactactactacttcgccggtgaattcttcttcttctcGGTGGCCGAAGGCGGAAGTTCATGCTTTGATAAGGATAAGGACAAGTCTAGAAACCAAGTATCAAGAGAATGGACCAAAAGCTCCATTGTGGGAAGATATCTCAATTGCAATGCAAAGGCTTGGGTACAACCGGAGTGCAAAGAGATGCAAGGAAAAATGGGAGAACATCAACAAGTACTTCAAGAGAGTGAGGGAGAGTAGCAAAGAAAGGCGTGAAGATAGCAAGACATGTCCCTATTTCCACGAGCTTGAAGCTCTATACAAAGAAAAGAGCAAATCATCCAAGAACCCCTTTGGCATCTTCCAGAATATGAAGCCTAATGAGATGATGCTGATGATGACGGAGCCACTGATGGTGCAACCGGAGCAACAATGGAGGCCCCCACCTCAATCATTGGAAGAGGGTGTAGGGATGGAGAATGCAAGTGAAGAATATCATGAAAATGAAGAAAATGGTGGTGATGATGATGATAACATTGAAGAAGATGGAGATAGTGTGGAAGATGAAGGAGCAAACCCGTGTGAGATTGCGACAAATAATTAA 1851 0.4149 MQLGDSSVLEISSHTQPEMAVTAVVSPPEEVAHDGSDNSGDGGSGDGGGGEMIGMDLDANSGEGNEGNNKMSFGGNRWPRQETLALLKIRSDMDTVFRDSSLKGPLWEEVSRKLAELGYQRSAKKCKEKFENVYKYNKRTKDNKSGKSHGKTYKFFDQLQALENQFTTVSYPPKPQPTSTLATTNPLTLPTRPSDHGNKVISYVTTFPSTNPTLISPSPQTNTTTTTTTTTSTTNPRDSSRPQTNNNNNSVTHSLPNMNTSFSTTTASTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDQRERERVAQQDNWRMQEMARINREHEILVQERSTAAAKDATVIALLQKMYGQQNPTPQVEVEPPPQQKQTIPQSQPPILMPNNNFEVKKINNGHSVTSTTTGTVATATTTTSPVNSSSSRWPKAEVHALIRIRTSLETKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKRVRESSKERREDSKTCPYFHELEALYKEKSKSSKNPFGIFQNMKPNEMMLMMTEPLMVQPEQQWRPPPQSLEEGVGMENASEEYHENEENGGDDDDNIEEDGDSVEDEGANPCEIATNN 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01494 616 CDD GT1 76 141 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 557 616 - -
Gma16g01494 616 ProSiteProfiles Myb-like domain profile. 429 493 IPR001005 -
Gma16g01494 616 MobiDBLite consensus disorder prediction 169 282 - -
Gma16g01494 616 CDD GT1 435 500 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 584 605 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 371 394 - -
Gma16g01494 616 ProSiteProfiles Myb-like domain profile. 70 134 IPR001005 -
Gma16g01494 616 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 605 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 169 192 - -
Gma16g01494 616 Pfam Myb/SANT-like DNA-binding domain 76 162 IPR044822 -
Gma16g01494 616 Pfam Myb/SANT-like DNA-binding domain 435 522 IPR044822 -
Gma16g01494 616 Gene3D - 437 498 - -
Gma16g01494 616 Gene3D - 78 139 - -
Gma16g01494 616 SMART sant 74 136 IPR001005 -
Gma16g01494 616 SMART sant 433 495 IPR001005 -
Gma16g01494 616 MobiDBLite consensus disorder prediction 1 76 - -
Gma16g01494 616 PANTHER - 1 605 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 62 76 - -
Gma16g01494 616 MobiDBLite consensus disorder prediction 198 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01494 Gma-Chr16 34330920 34333946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01494 74 560 Trihelix Transcription Factor Family AT1G76890 47.692 5.28e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma16g01494 Myb_DNA-bind_4 2.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01494 - - gmx:100776819 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01494 16 34330920 34333946 Gma02g00737 02 7144262 7147474 GST
Gma16g01494 16 34330920 34333946 Gma10g02148 10 48983476 48986219 PCT
Gma16g01494 16 34330920 34333946 Gma20g01566 20 42729286 42732538 PCT
Gma10g02148 10 48983476 48986219 Gma16g01494 16 34330920 34333946 PCT
Gma20g01566 20 42729286 42732538 Gma16g01494 16 34330920 34333946 PCT