Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01492 ATGTCCTTCCGCAGTATTGTTCGTGATGTTAGGGACGGATTTGGAAGCTTATCAAGGCGGAGTTTTGATGTAAGGCTTTCTGGTGGGGGCAAGTCGAATAGTTTGGTCCATGAGGAGCACGAATGCCTGCCAGTTGTACAGAACAGCCGGTGGGCTAGCCTTCCGCCTGAGCTTCTTCGTGATGTTATTAAAAGATTGGAAGAAAGTGAGACTACATGGCCTGCTCGTAAGCACGTGGTTGCGTGTGCTGCTGTGTGCAGGTCCTGGAGAGGAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCGCGCAGAATGAACTGCACCATGCACTCAATCCCTATGTCAGCCCTTGAGCCTGGTTGCACTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGCTCCCTTGAGGATTCCTTCCGAAGCATATCCTTTGCTAGATCGATCGATAACTCAACCGAGTTTAGCAGCTCCAGGTTCTCGGACATATTTCTGGCAGGCAAAGAAGAGGAGCAGGGAAAGGATAGGCCTTTAGTTCTCAAGAACAAATCTCCAAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACTGTTGCGTCCGTCAAGAATTTTCAGCTGATTGCTGCAACGCAGCCACCTGCAACTGGTGCTCCTACGCCATCATCGCAGCCTGCTCAGTCTGATCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATATTTACTATGGACTATAGATATCCCCTATCTGCTTTTCAGGCTTTTGCCATTTGCTTGACTAGTTTTGACACAAAACTGGCTTGTGAATAG 1275 0.4706 MSFRSIVRDVRDGFGSLSRRSFDVRLSGGGKSNSLVHEEHECLPVVQNSRWASLPPELLRDVIKRLEESETTWPARKHVVACAAVCRSWRGMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPMSALEPGCTVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIFLAGKEEEQGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPATGAPTPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01492 424 SUPERFAMILY Tubby C-terminal domain-like 100 424 IPR025659 -
Gma16g01492 424 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Gma16g01492 424 Gene3D Tubby Protein; Chain A 108 424 IPR025659 -
Gma16g01492 424 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Gma16g01492 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Gma16g01492 424 PANTHER TUBBY-RELATED 1 424 - -
Gma16g01492 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 424 - -
Gma16g01492 424 Pfam F-box domain 51 97 IPR001810 GO:0005515
Gma16g01492 424 Gene3D - 46 99 - -
Gma16g01492 424 SUPERFAMILY F-box domain 42 95 IPR036047 GO:0005515
Gma16g01492 424 Pfam Tub family 112 419 IPR000007 -
Gma16g01492 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01492 Gma-Chr16 34271529 34277717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01492 1 424 TUB Transcription Factor Family AT1G76900 69.499 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma16g01492 Tub 6.3e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01492 K19600 - gmx:100803729 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01492 16 34271529 34277717 Gma16g01492 16 34271529 34277717 ECH
Gma16g01492 16 34271529 34277717 Gma02g00735 02 7109355 7114740 GST
Gma16g01492 16 34271529 34277717 Gma10g02147 10 48961840 48965916 PCT
Gma16g01492 16 34271529 34277717 Gma20g01567 20 42750406 42754759 PCT
Gma10g02147 10 48961840 48965916 Gma16g01492 16 34271529 34277717 PCT
Gma20g01567 20 42750406 42754759 Gma16g01492 16 34271529 34277717 PCT