Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01476 ATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGTGAGTTTATCCGGTTCACGGAAAGTCATGGCGGTGGTGGCGATGACGTCAGTGGTGACGGTGAACATGGTTGTGGACATGATGATGGAAGTGGTGCTGGAGGTTCACTAGGGTTGAATTTTAACCAAGTGATGCAACAAGGTGAGGTGACAATGCAAGGTGGTTCATTGGTTTCAGGGTATAACAGGGGTGATCCAGAGTTGAGAGAAATAGTTTCAGCTTTGACACACGTGGTGTCTTCAGGGTCTGGCCAGAGGAGCACCGAATGGACCCAGCAAAGTGGTTTTCCTATGATGTCTGCTTCTTCTCTTTCACGTTTGTCTGCTTTCTCTTCTTCTTCTCCTTCTCCTTCTTCTGGAGCCTCTTGGGTTGGCCACAAAAGAGGCAGAGAAGAAGAAGAGAATAGTACTTCACATAACTTGATGCAACAACAACAACAAAGTGCTCCAAGACTCTTTAGAAACATTGGTGACTTCATGGTGCCTTCTCAAGGAGACTCATCATCAGTGACAGAAGAAGCCCCCACCTCCACAACTACAACTGTAACCACCGTCACAACGGCGGTTACTGAAAACCCACCAGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTAGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGAGCAAAGCTTAACTTCCCTGAAAATGTAAGAGCAGTTCCACCCATTCAACCTTTTCAAGCCACCACTAGGCTAACCGTTTCTGATTCCACCACCTCTCAATTCCGGCCACTCTCCGCGGTGGCGCCACCCTTCATTCAGCAGCCACAGATTCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAACAAATACAACAACAACAGCAGCAGCAGCGGCAGCAGCAACAACAACAACAACCATCTAGTTTGCTTCAGCAGTTGTACTATAATGCACAATTTGCTTCACTTCAATCACCTTCAATGCTATCATCATCTCCTTCATTTTCTTCTTCTGTGTCTCCAGCACCATTCCCATTATTCACAACCTCTGCTTCTTTCCCCTTGTTTTCAAGTCAACAAATGGGCTATTTCCAGCCACCGGAAAGCCGCAATCCCGCTGGCGGCGTGCCGGAGTTTCCAACGTCCACATGGTCGGATACCAGTAGCCAGCCACCACCTTCTGGTTGA 1338 0.4873 MSLLTVAHQRGSGEFIRFTESHGGGGDDVSGDGEHGCGHDDGSGAGGSLGLNFNQVMQQGEVTMQGGSLVSGYNRGDPELREIVSALTHVVSSGSGQRSTEWTQQSGFPMMSASSLSRLSAFSSSSPSPSSGASWVGHKRGREEEENSTSHNLMQQQQQSAPRLFRNIGDFMVPSQGDSSSVTEEAPTSTTTTVTTVTTAVTENPPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQATTRLTVSDSTTSQFRPLSAVAPPFIQQPQIQGSSDLIRDYLQYSQLLQSDFQQQQIQQQQQQQRQQQQQQQPSSLLQQLYYNAQFASLQSPSMLSSSPSFSSSVSPAPFPLFTTSASFPLFSSQQMGYFQPPESRNPAGGVPEFPTSTWSDTSSQPPPSG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01476 445 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Gma16g01476 445 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 79 414 - -
Gma16g01476 445 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 Coils Coil 334 354 - -
Gma16g01476 445 MobiDBLite consensus disorder prediction 426 445 - -
Gma16g01476 445 CDD AP2 214 273 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Gma16g01476 445 MobiDBLite consensus disorder prediction 19 43 - -
Gma16g01476 445 PANTHER DNA-BINDING DOMAIN 79 414 IPR044808 GO:0003700|GO:0009873
Gma16g01476 445 MobiDBLite consensus disorder prediction 173 194 - -
Gma16g01476 445 MobiDBLite consensus disorder prediction 120 160 - -
Gma16g01476 445 MobiDBLite consensus disorder prediction 410 445 - -
Gma16g01476 445 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01476 Gma-Chr16 34013840 34016131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01476 211 278 AP2-EREBP Transcription Factor Family AT2G33710 77.941 5.66e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma16g01476 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01476 - - gmx:100817436 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01476 16 34013840 34016131 Gma16g01476 16 34013840 34016131 ECH
Gma16g01476 16 34013840 34016131 Gma02g00722 02 6952675 6954960 GST
Gma16g00430 16 4586155 4590176 Gma16g01476 16 34013840 34016131 PCT
Gma16g01476 16 34013840 34016131 Gma10g02135 10 48834682 48836248 PCT
Gma16g01476 16 34013840 34016131 Gma20g01580 20 42887819 42889147 PCT
Gma10g02135 10 48834682 48836248 Gma16g01476 16 34013840 34016131 PCT
Gma20g01580 20 42887819 42889147 Gma16g01476 16 34013840 34016131 PCT