Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01453 ATGGCGGCTGCAATGATTTCTGCTCCGGCGGTGGCAATGAGGGTGGTGGTTCCAGCTTTGAACGGTGTGCAATCCGGGAATGCCTCTTTGTACGTTGGTGATCTTGAGAGGAACGTTGATGAGGCGCAACTGTTTGAACTGTTTGGCCAAGTAGGCCAAGTGGTTTCAATTAGGGTTTGTAGGGATCTCACAATGCGATCTCTTGGATATGCTTACGTTAACTTTGTCAACCCCCAAGATGCTGCTAATGCCATGGAACATCTGAATTTCACTCCTTTGAATGGAAAATCCATCCGTGTTATGTTTTCTAACCGAGATCCTAGCATTCGAAAAAGTGGATATGCAAATGTGTTTATCAAGAACCTTGACATATCAATAGATAACAAGGCATTACATGACACTTTTTCTGCCTTTGGATTTGTACTCTCTAGTAAGGTAGCCGTTGATAACAATGGTCAATCGAAAGGGTATGGATTTGTGCAGTTTGACAATGAAGAGTCTGCACAAAATGCTATCAAAAAGTTGAATGGCATGTTGATAAATGATAAAAAAGTCTATGTTGGACTCTTTGTTAGGCGCCAAGCAAGGGCTCAAGTAAATGAATCACCAAAGTTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATATACTGATGAAGATCTTAAGCAGCTCTTTAGCACCTATGGTCCAATAACCAGTGTTGTGGTCATGAAAGACACAGATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGTTGCTGCCATTGAAAGGTTAAACGGAACCGCAGTCAATGATGATAAGGTTTTATATGTAGGTAGGGCTCAGCGCAAAGCCGAAAGAGAGGCAGAATTGAAAGCTAGATTTGAGCGGGAAAGAATGAGAAAATATGAAAAATTACAAGGTGCTAATTTGTACGTGAAAAATCTCGATTATAGCATCAATGAAGAAAACTTGAAGGAGTTATTTTCTAAGTTTGGAACAATAACATCTTGCAAGGTGATGCTTGAACCAAATGGGCATAGCAAGGGCTATGGTTTTGTTGCCTTTTCAACTCCCGAGGAAGGAAATAAAGCATTGAATGAAATGAATGGAAAGATGATTGGACGTATGCCCCTGTATGTAGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCTTTTGCAGGCTCAATTTTCTCAAATGCAAGCCCTAGGTGCAATTACACCTTTTCATGGGGGAATCCCAGGATATCATCCAGGGGCACCAAGCCTTTCCCCTCAACAGTTGTATTTTGGTCAAGGGCCAAATGGTCTTGTACCACCTCAGCCAACGGGATATGGTTTCCAGCAGCAACTCCTGCCAAACATTCATCCTGGTGTTGCTCCAAATTTCTTTATGCCATACCACCCACAAAGACAGGCCCCTCCTTCGCAAAGAAGGGATCCTCGAAGATTTGGAAATCTCCAACAGGTGCACCATAACCAGATGTTGCATCCTAACTCCAACCAAGGGTTTAGATACATGGAGAATGGTCGAAATGGAATGGATCCGTCAGTAATTCCCCATGGTATGGGGGGTCCAATGATGCCATTGCCCTTTGATGGTTCTGGAATTTCTGCAGTTCATACTTATAATCAATATCATGCTGGTGCATCGTCTAACACACTTGCCTCGGCTCTAGCTTCTGCTACCCCAGAAAATCAGCACCTGATGCTAGGTGAACATTTATACCCACTTGTGGATGGACTTACTGCAAATCACCAGCAGACTGCAAAGGTGACAGGAATGTTGTTGGAAATGGACCAGTCAGAGGTCATCCATCTGATGGAGTCTCCCGAGGACTTGAAAATAAAGGTGTCTGAGGCAATGCTGGCCCTTCGTGAAGCTGCACCAggttctgaagaagttgctggttctgaagaagttggcggttctgaagaagttggtggttctgaagaagttggtgATCAACTTGGCTCACTATCATTGAATGAATGA 2001 0.4158 MAAAMISAPAVAMRVVVPALNGVQSGNASLYVGDLERNVDEAQLFELFGQVGQVVSIRVCRDLTMRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKALHDTFSAFGFVLSSKVAVDNNGQSKGYGFVQFDNEESAQNAIKKLNGMLINDKKVYVGLFVRRQARAQVNESPKFTNVYVKNFSETYTDEDLKQLFSTYGPITSVVVMKDTDGKSRCFGFVNFESPDSAVAAIERLNGTAVNDDKVLYVGRAQRKAEREAELKARFERERMRKYEKLQGANLYVKNLDYSINEENLKELFSKFGTITSCKVMLEPNGHSKGYGFVAFSTPEEGNKALNEMNGKMIGRMPLYVAVAQRKEERKALLQAQFSQMQALGAITPFHGGIPGYHPGAPSLSPQQLYFGQGPNGLVPPQPTGYGFQQQLLPNIHPGVAPNFFMPYHPQRQAPPSQRRDPRRFGNLQQVHHNQMLHPNSNQGFRYMENGRNGMDPSVIPHGMGGPMMPLPFDGSGISAVHTYNQYHAGASSNTLASALASATPENQHLMLGEHLYPLVDGLTANHQQTAKVTGMLLEMDQSEVIHLMESPEDLKIKVSEAMLALREAAPGSEEVAGSEEVGGSEEVGGSEEVGDQLGSLSLNE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01453 666 CDD RRM1_I_PABPs 29 107 - -
Gma16g01453 666 CDD RRM3_I_PABPs 205 285 - -
Gma16g01453 666 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 627 IPR006515 GO:0003723
Gma16g01453 666 CDD RRM4_I_PABPs 309 387 - -
Gma16g01453 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Gma16g01453 666 Coils Coil 385 405 - -
Gma16g01453 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Gma16g01453 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Gma16g01453 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 99 IPR000504 GO:0003723
Gma16g01453 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Gma16g01453 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Gma16g01453 666 Gene3D - 550 631 - -
Gma16g01453 666 SUPERFAMILY RNA-binding domain, RBD 28 194 IPR035979 GO:0003676
Gma16g01453 666 CDD RRM2_I_PABPs 113 188 IPR045305 -
Gma16g01453 666 SMART rrm2_1 29 101 IPR003954 GO:0003676
Gma16g01453 666 SMART rrm2_1 311 382 IPR003954 GO:0003676
Gma16g01453 666 SMART rrm2_1 116 188 IPR003954 GO:0003676
Gma16g01453 666 SMART rrm2_1 207 279 IPR003954 GO:0003676
Gma16g01453 666 SUPERFAMILY RNA-binding domain, RBD 306 397 IPR035979 GO:0003676
Gma16g01453 666 Gene3D - 21 115 IPR012677 -
Gma16g01453 666 Coils Coil 279 307 - -
Gma16g01453 666 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 632 IPR002004 GO:0003723
Gma16g01453 666 SUPERFAMILY RNA-binding domain, RBD 201 302 IPR035979 GO:0003676
Gma16g01453 666 SMART poly_2 565 630 IPR002004 GO:0003723
Gma16g01453 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Gma16g01453 666 Gene3D - 292 396 IPR012677 -
Gma16g01453 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Gma16g01453 666 PANTHER RNA BINDING PROTEIN 17 636 - -
Gma16g01453 666 SMART rrm1_1 207 280 IPR000504 GO:0003723
Gma16g01453 666 SMART rrm1_1 116 188 IPR000504 GO:0003723
Gma16g01453 666 SMART rrm1_1 29 101 IPR000504 GO:0003723
Gma16g01453 666 SMART rrm1_1 311 383 IPR000504 GO:0003723
Gma16g01453 666 MobiDBLite consensus disorder prediction 630 666 - -
Gma16g01453 666 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Gma16g01453 666 Gene3D - 192 291 IPR012677 -
Gma16g01453 666 Gene3D - 116 189 IPR012677 -
Gma16g01453 666 PANTHER POLYADENYLATE-BINDING PROTEIN 17 636 - -
Gma16g01453 666 SUPERFAMILY PABC (PABP) domain 495 633 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01453 Gma-Chr16 33630707 33634857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01453 3 638 Eukaryotic Initiation Factors Gene Family AT4G34110 55.435 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01453 K13126 - gmx:100808877 1257.28