LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g01447	ATGGCAGAAAGAGCAGAACCAtcctcgtcttccttcgcagacaaatggaatttttatgatgtcttcctcagttttagaggcaaagacactcgtcaaaatttcactggccatctctacaattctctattcaaaaatggaattcttactttcatagatgataaagggcttaggaggggggaagaaattacaccagctcttctcaatgccattaagaattcaaggattgccatcattgttttctcagaggactatgcatcctcaacttattgcttggatgaacttgtcacgatccttgagagcttcaaggaagaagagggtcgatcaatttatccaatattttattatgtggatccatcacaagttcggcatcaaacagggacttattcagatgcattggcaaaacacgaagaAAGGTTCCAATATGACATTGACAAAGTGCAACAATGGAGGCAGGCTTTATATCAAGCAGCTAATCTATCAGGCTGGCATTTCCATGGATCTCAACCAGAGTATAAGTTTATACTAAAGATTGTTAAAGAGATCTCTGAAAAGATTGATTGTGTTCCTTTACACGTTGCTGATAAACCAATTGGGCTAGAGTATGCAGTGCTAGCAGTGAAATCTCTCTTTGGACTCGAATCtgatgtcagcatgataggaatatatggtattggtggtataggtaaaaccacaattgctcgtgccgtgtataacatgagttttagtaaatttgaaggcatctgtttcctccctgacattagagaaaaggcaattaataagcatggccttgttgaactccaagaaatgctactttctgaaacactcaaggagaaagatatcaaagtgggacatgtcaacaaaggaattcaaataataaaacagaggcttcaacaaaagaaggttcttttaattctagatgatgttgacaaattagagcagttaaaggtccttgcaggacaatatgattggtttggttctggaagtataatcattatcaccacaagagacaaacacttgctggctactcatgaggtggtaaaattatatgaggttaaaccattaaatgatgaaaaatctcttgaattgtttgattggcatgcctttaaaaataataaaactgatccaagttatgtgactatttcaaaccgtgcagtttcttatgcatgtggccttcccttggctttggaagttataggttctgacttatttggaaaaagtttgaatgaatgtaattctgcattggataaatatgaaagaattcctcatgaaaaaatccatgaaatatttaaagtaagctatgatggtttggaagaaaacgagaaggggattttccttgacattgcttgtttcttgaatacttttaaagtgagctatgtcacacaaatgctacacgctcatggttttcatccagaagatggtttgagagtgttggttgacaaatctctcgtaaagattgatgcttctggttttgtgagaatgcatgatctaattagagatacaggcatagaaattgtaaggcaagaatcaacagttgagcctggcagacgtagtaggttatgGTTTAAAGAGGACATTGTTCATGTTTTGGAAGAAAATACGGGAACTGATAAAATAGAATTCATAAAGCTTGAAGGGTACAACAACATACAAGTGCAATGGAATGGAAAAGCCTTCCAGAAGATGAAGAACCTGAGAATTTTGATAATTGAAAATACAACCTTTTCTACAGGCCCTGAGCATCTACCGAATAGTTTGAGATTTCTAGACTGGAGCTGCTATCCTTCACCATCTTTACCATCTGATTTCAATCCAAAACGAGTTGAGATACTCAAAATGCCTGAAAGTTGCCTTAAAATCTTCCAACCTCACAAGATGCTTGAATCATTGTCTATAATAAACTTTAAAGGTTGCAAGGTCTTAACCCATCTGCCGAGCCTAAGAGAAGTACCACTCGTAACCTTTTTGTGTCTCGATTACTGCAGTAATTTAGTTAAAATTGATTGTTCAATTGGGTTTCTTGATAAGCTCCTCACCCTGAGTGCTAAAGGATGCTCCAAGCTGAAAATTCTAGCACACTGCATCATGTTGACTTCTCTCGAAATTTTGGATCTTGGGGATTGCTTGTGTCTTGAGGGCTTCCCAGAAGTATTGGTTAAGATGGAGAAAATAAGAGAAATATGTTTAGACAACACAGCCATAGGCACATTGCCATTTTCAATTGGAAATCTTGTTGGACTTGAACTCTTGTCCCTGGAGCAATGCAAAAGGCTGATTCAGCTACCAGGTAGTATCTTTACACTGCCGAAAGTTGAAGTGATATTTGGTTTTAGGCATTGGAGATATCTATTCTTTGAAGAGAACCAAGATGGGAAAGAGTTGAGTTTAGAAGTGTTTCCAAAGGCCATTCTTGTTTGCCATCTTGATCCCAGGCATTATCATCATCTTGACCTGTATTATCTGTACATGAGTCCTAATAATGTCATCCAAGTATGCAGTCCTAATCTGTATATGCTCTGTGATTTCGATTTGTTGTTCCAAAAGCTTGCATTGGGTGTCGAGAAGGACTGGTTTCGCAGATGCAGGAAATGGTCAATGAATTTCTCGTTTCGAAAAAAGTTTCCTAAGATTGCGGTATGTTGTTCTATAATATCTAGATTGAAAAGTGTCATGGAAATGGTGTTGATTTTGAAGTTCAGCGTACTCATCAATGGCACTATGCAATTTAGTTCTTCATGTAATTACATATTTAGAACATGGGACCCGATACTCTGGTGTGATCTAGAATGCAAAGCGGAGGGAATATTTTCAGAGCACGAATGGAATGAAGCTGAGATTTTATTCGAGTTGAAATGTCCTGCACCAAGTTCTGTAGAAGCAATGTGGGCCCACAACATTTCCATGGAAATTATAGACTGGACTCTAATTGGTGTCTACAATCAAGGAAACATTAAGGATGATATTAAATTCAAAATGCCGATGTCAACTTTTTTACTCCCTAACAGAGAACCTCCTTCATTACCTGGTTGTTTGTACTATGTTGTTAGTCATGTGACCGATAAGCTTGTATTGGTGGTAGACGATGGAAGGGAGAAGGATGAACAGGAAGAGAAAATTATTGGATAA	3123	0.2245	MAERAEPSSSSFADKWNFYDVFLSFRGKDTRQNFTGHLYNSLFKNGILTFIDDKGLRRGEEITPALLNAIKNSRIAIIVFSEDYASSTYCLDELVTILESFKEEEGRSIYPIFYYVDPSQVRHQTGTYSDALAKHEERFQYDIDKVQQWRQALYQAANLSGWHFHGSQPEYKFILKIVKEISEKIDCVPLHVADKPIGLEYAVLAVKSLFGLESDVSMIGIYGIGGIGKTTIARAVYNMSFSKFEGICFLPDIREKAINKHGLVELQEMLLSETLKEKDIKVGHVNKGIQIIKQRLQQKKVLLILDDVDKLEQLKVLAGQYDWFGSGSIIIITTRDKHLLATHEVVKLYEVKPLNDEKSLELFDWHAFKNNKTDPSYVTISNRAVSYACGLPLALEVIGSDLFGKSLNECNSALDKYERIPHEKIHEIFKVSYDGLEENEKGIFLDIACFLNTFKVSYVTQMLHAHGFHPEDGLRVLVDKSLVKIDASGFVRMHDLIRDTGIEIVRQESTVEPGRRSRLWFKEDIVHVLEENTGTDKIEFIKLEGYNNIQVQWNGKAFQKMKNLRILIIENTTFSTGPEHLPNSLRFLDWSCYPSPSLPSDFNPKRVEILKMPESCLKIFQPHKMLESLSIINFKGCKVLTHLPSLREVPLVTFLCLDYCSNLVKIDCSIGFLDKLLTLSAKGCSKLKILAHCIMLTSLEILDLGDCLCLEGFPEVLVKMEKIREICLDNTAIGTLPFSIGNLVGLELLSLEQCKRLIQLPGSIFTLPKVEVIFGFRHWRYLFFEENQDGKELSLEVFPKAILVCHLDPRHYHHLDLYYLYMSPNNVIQVCSPNLYMLCDFDLLFQKLALGVEKDWFRRCRKWSMNFSFRKKFPKIAVCCSIISRLKSVMEMVLILKFSVLINGTMQFSSSCNYIFRTWDPILWCDLECKAEGIFSEHEWNEAEILFELKCPAPSSVEAMWAHNISMEIIDWTLIGVYNQGNIKDDIKFKMPMSTFLLPNREPPSLPGCLYYVVSHVTDKLVLVVDDGREKDEQEEKIIG	1040

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g01447	1040	Gene3D	-	353	437	IPR042197	-
	Gma16g01447	1040	Pfam	TIR domain	19	184	IPR000157	GO:0007165
	Gma16g01447	1040	ProSiteProfiles	TIR domain profile.	17	185	IPR000157	GO:0007165
	Gma16g01447	1040	SUPERFAMILY	L domain-like	543	843	-	-
	Gma16g01447	1040	PRINTS	Disease resistance protein signature	218	233	-	-
	Gma16g01447	1040	PRINTS	Disease resistance protein signature	295	309	-	-
	Gma16g01447	1040	PRINTS	Disease resistance protein signature	388	402	-	-
	Gma16g01447	1040	PRINTS	Disease resistance protein signature	694	710	-	-
	Gma16g01447	1040	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	162	IPR035897	-
	Gma16g01447	1040	Gene3D	-	199	348	IPR027417	-
	Gma16g01447	1040	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	447	IPR027417	-
	Gma16g01447	1040	Pfam	NB-ARC domain	209	427	IPR002182	GO:0043531
	Gma16g01447	1040	SUPERFAMILY	"Winged helix" DNA-binding domain	424	530	IPR036390	-
	Gma16g01447	1040	SMART	till_3	18	159	IPR000157	GO:0007165
	Gma16g01447	1040	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	20	720	-	-
	Gma16g01447	1040	SMART	AAA_5	215	350	IPR003593	-
	Gma16g01447	1040	Gene3D	-	17	188	IPR035897	-
	Gma16g01447	1040	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	720	IPR044974	GO:0006952
	Gma16g01447	1040	Gene3D	Ribonuclease Inhibitor	522	864	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g01447	Gma-Chr16	33565546	33569553	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g01447	19	773	WRKY Transcription Factor Family	AT4G12020	34.536	4.07e-98	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g01447	-		-	gmx:100805685	2060.42