Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01446 ATGtcctcctcctccattagctatggatggaaatatgatgtgttcctcagcttcagaggttctgatactcgccatggttttactggtcatctctacaaagctctcttagacagaggaatctacacctttattgacaatgaggagcttcaaagaggagaagagatcacaccatcacttgtcaaggcaattgaagactctaggattgccatccttgttttctctaagaactatgcttcttccacgttttgcttagatgaacttgtacacatccttgcctgtgttaaagaaaagggtacaatggttttaccggttttttatgaggttgatccctctgatgtacgacaccaaagaggtagctacgaagaagcactgaataaacataaggagaagttcaatgacgacgaagagaaattgcagaaatggaggattgctctgcgtcaagcagctaacttgtctggttatcattttaaaCATGGGAACGAAAATGAATATGATTTTGTTGGCAAGATTATTAAAGAGGTCTCCCAAAGAATTAGTCGCACTCATTTGCATGTTGCGAATAACCTGGTTGGATTGGAGTCTCGAGTGCTGCATGTAACCTCCCTTTTAGATGATAAATATGATGGAGTTCTCATGGTAGGGATCTATGAAGCACGGACACTTCAGCCCTTTGCCGTGTCCGGTGTCCGACACGCGTCCGTGTCAGTGTCCGACACCGACACGACACCCGTATTACGTTCTATATTTTGGACATTACAGGTGTCCACGTGTCCGTATCCGTGTCGTGTCCGGTGTCCGTGTCGGTGTCAGTGCTTCATAGgaaaaacaacgattgctcgagaagtttataatttgattgctgatcaatttgaatggttgtgttttcttgataatgtgagagaaaactcaattaaacatggattggtgcatctccaaaagacacttctttctaaaacaattggagagagtagtattaagttaggaagtgttcacgaaggaattccaataataaagcataggttcctcctaaagaaggttcttttggttgttgatgatgttgacgatctagatcagttgcaggcaattgttggagggaccgattggtttggttctgccagcagagtcatcattaccactcgagacaaacatttactaacatgccatggggttacaagcacatatgaggttgatgggttaaataaggaagaggctcttaaattgcttagtgggactgctttcaaaattgacaaagttgatccatgctatatgagaattttaaaccgtgtggtaacttatgcttctggccttccactggctttgatggtaataggttccaacttgtttggaaaaagcatagaagaatgggaatcttccatagatcagtatgagagaattcctaataaaaagattcaagacgtactcaaagtaagttttgattctttagaagaagatgagcaacaaatttttcttgatattgcttgttgcttcaaaggatatgctttgacatatgttaaagaaatactttctactcatcacaatttctgtccggaatatgctattggagtgttgattgacaaatctctcataaaggtcgatgcagatcgtgtgatattgcatgacttgatagaggacatgggtaaagaaattgtccgacaggaatcaccaagagagccaggaaaacgcagtaggttatgGTTTCCTGATGATATAGTTGAAGTTTTGGAAGAAAATAAGGGAATTAGCAGAATTCAAATGATAACTCTGGATTACCTCAAATATGAAGCAGCAGTAGAATGGGATGGAGTGGCATTCAAGGAGATGAATAACCTCAAAACACTTATTATTAGAAGTGGTTGTCTTCATGAAGGTCCCATACATCTTCCGAATAGTTTAAGAGTATTAGAATGGAAGGTATACCCTTCACCATCTTTACCAATTGATTTCAATCCCAAGAAACTTGTCATACTGAAGTTTCCTTATAGTTGCTTAATGTCTCTTGATGTGCTCAAGTCGAAGAAGATTTTTTTGAAGATGAGAGTTTTGAATTTTAATGATTGTCAATATATAAGAGAGATACCTGACCTATATGGTGTCCCAAATTTACAAGAATTATCATTTTGCAATTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTTCTGGATAAACTTAAAATCTTGTATGCTGAAGGCTGCAGCAAGCTTATGAGTTTTCCGCCAATCAAATTGACCTCTCTTGAAATACTCCAGCTTTCATATTGTCATAGTCTTGAGAGTTTTCCAGAAGTATTAGGGAAGATGGAAAATGTAACTTCTCTTGATATTTATGGCACTGTTATAAAAGAACTGCCATTTTCAATTCAGAATCTCACACGGCTTCGAAGACTTGAACTGGTGAGATGTGAGAATCTTGAACAAATTAGAGGGGTTCCACCTAATTTAGAAACATTCTCTGTAAAAGATTGCTcatccttgaaagatttagatctcacacttcttccttcatggacaaaggaacgtcatcttttaaaggagcttcgtttacatggaaacaagaatcttcaaaatattaaagggattcaactgagcatagaagtactgagtgtagaatactgcacatccttgaaagatttagatctcacacttcttccttcatggacaaaggaacgtcatcttttaaaggagcttcatttacatggaaacaagaatcttcaaaaaattaaagggattccactgagtatagaagtactgagtgtagaatactgcacatccttgaaagatgtagatGTTACTCTTCCTCCTGCATGCACCCAAGAATGTTGCATTTTGAGTACACTTTTCTTTGATGCTTGTGGGATGAATCTTCATGAAATACACGGGATTCCGTCGATCATTAGAACTTGTTCTGCCAGAGGCTGTCAATACTCGACATCTGTGCCCACAGGCATGTTACTGAATAAGGAATTGCATGAGGTCAGTGGATTCAAATTGCTCAGAAGAAGGATTCTAGAGTGGTTCGAGCATAGTACAAACGAATCGTCAATTTCTTTCTCATTTCGTACCAAGTTCCCTGTGATATCTTTCTGTGTTGTTGCTAGACCCAACACATATTTAAACCTTGGACCCATATTTATTTTCGATGGTATGAAACGTTTGTTACTAAGGGAGTTCCATTTTGACCAAAAAGAAGACTATGCACTGATTTTTTGTAAAGATGAGAATTTTGAATTTTAA 3237 0.1881 MSSSSISYGWKYDVFLSFRGSDTRHGFTGHLYKALLDRGIYTFIDNEELQRGEEITPSLVKAIEDSRIAILVFSKNYASSTFCLDELVHILACVKEKGTMVLPVFYEVDPSDVRHQRGSYEEALNKHKEKFNDDEEKLQKWRIALRQAANLSGYHFKHGNENEYDFVGKIIKEVSQRISRTHLHVANNLVGLESRVLHVTSLLDDKYDGVLMVGIYEARTLQPFAVSGVRHASVSVSDTDTTPVLRSIFWTLQVSTCPYPCRVRCPCRCQCFIGKTTIAREVYNLIADQFEWLCFLDNVRENSIKHGLVHLQKTLLSKTIGESSIKLGSVHEGIPIIKHRFLLKKVLLVVDDVDDLDQLQAIVGGTDWFGSASRVIITTRDKHLLTCHGVTSTYEVDGLNKEEALKLLSGTAFKIDKVDPCYMRILNRVVTYASGLPLALMVIGSNLFGKSIEEWESSIDQYERIPNKKIQDVLKVSFDSLEEDEQQIFLDIACCFKGYALTYVKEILSTHHNFCPEYAIGVLIDKSLIKVDADRVILHDLIEDMGKEIVRQESPREPGKRSRLWFPDDIVEVLEENKGISRIQMITLDYLKYEAAVEWDGVAFKEMNNLKTLIIRSGCLHEGPIHLPNSLRVLEWKVYPSPSLPIDFNPKKLVILKFPYSCLMSLDVLKSKKIFLKMRVLNFNDCQYIREIPDLYGVPNLQELSFCNCENLIKIHESVGFLDKLKILYAEGCSKLMSFPPIKLTSLEILQLSYCHSLESFPEVLGKMENVTSLDIYGTVIKELPFSIQNLTRLRRLELVRCENLEQIRGVPPNLETFSVKDCSSLKDLDLTLLPSWTKERHLLKELRLHGNKNLQNIKGIQLSIEVLSVEYCTSLKDLDLTLLPSWTKERHLLKELHLHGNKNLQKIKGIPLSIEVLSVEYCTSLKDVDVTLPPACTQECCILSTLFFDACGMNLHEIHGIPSIIRTCSARGCQYSTSVPTGMLLNKELHEVSGFKLLRRRILEWFEHSTNESSISFSFRTKFPVISFCVVARPNTYLNLGPIFIFDGMKRLLLREFHFDQKEDYALIFCKDENFEF 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01446 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 492 IPR027417 -
Gma16g01446 1078 SMART till_3 11 151 IPR000157 GO:0007165
Gma16g01446 1078 Gene3D Ribonuclease Inhibitor 768 987 IPR032675 -
Gma16g01446 1078 Gene3D Ribonuclease Inhibitor 596 767 IPR032675 -
Gma16g01446 1078 SUPERFAMILY L domain-like 831 1020 - -
Gma16g01446 1078 PRINTS Disease resistance protein signature 433 447 - -
Gma16g01446 1078 PRINTS Disease resistance protein signature 742 758 - -
Gma16g01446 1078 PRINTS Disease resistance protein signature 340 354 - -
Gma16g01446 1078 Gene3D - 8 184 IPR035897 -
Gma16g01446 1078 Gene3D - 398 482 IPR042197 -
Gma16g01446 1078 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 154 IPR035897 -
Gma16g01446 1078 PANTHER ARCHAEAL ATPASE 22 1023 - -
Gma16g01446 1078 SUPERFAMILY "Winged helix" DNA-binding domain 468 575 IPR036390 -
Gma16g01446 1078 Gene3D - 273 391 IPR027417 -
Gma16g01446 1078 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gma16g01446 1078 SUPERFAMILY L domain-like 587 887 - -
Gma16g01446 1078 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 1023 IPR044974 GO:0006952
Gma16g01446 1078 Coils Coil 124 144 - -
Gma16g01446 1078 Pfam NB-ARC domain 273 470 IPR002182 GO:0043531
Gma16g01446 1078 Pfam TIR domain 11 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01446 Gma-Chr16 33558315 33562834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01446 273 929 WRKY Transcription Factor Family AT5G45050 29.730 3.38e-69 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01446 - - gmx:100805145 1970.28