Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01428 ATGGAGGATTCAGAGGAAGAAGAACTTCTAAATCTTACTCTTTCAGTTGATGCTGGTAGGAAGAGGAGAAAGAAAGGAAGGACAAGGGATAGTAATAATAATAATAGTAACACTAATTCTGTTATTATTCCTATTAAGTCCAACGAAGGGATGATCTTCAGGCTCCTCCAAATGAGGGAGCTGATGCTAAGACAAGACCACAGAATTAGAAAAGGAGTAGTTGAAGATGGGATCAACAACAACAAGAATGGCCTTCCTTTGATTCACTTGCTTCTCTCAACAGCCACTGCTGTTGATGATCAAAGAAACTATTGTGCAGCTCTTGAGAATCTCATTGACTTGTACCAAACAGTTTCCCTAACAGGTGACTCGGTTCAACGTGTTGTGGCCTATTTCGCTGATGGTTTGGCTGCAAGGCTTCTCACAAAAAAGTCACCTTTCTATGACATGCTCATGGAGGAGCCAACAAGTGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCCATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATGTCTCCTACGGCTTCCAATGGCCTTCTCTTATTCAATCACTCTCCGAAAAGGCAACCAGTGGCAACAGAATTTCCCTCAGGATAACAGGTTTTGGGAACAATCTGAAAGAATTGCAAGAAACTGAGGCAAGGTTGGTTAGTTTCTCAAAGGGGTTTGGTAATCACCTTGTGTTTGAGTTCCAAGGGCTTCTAAGAGGGTCTTCAAGGGTCTTCAACCTGAGGAAAAAGAAAAATGAAACTGTGGCAGTGAACCTTGTTTCTTATTTGAACACTTCGAGTTGTTTCATGAAGGCTTCTGACACATTGGGATTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGTAGGAGTCTTAAGACCTTCTTGTCAAGGTTCACTGAGTCGTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGATTGCTTGCCACTTGAGAGCACTGAGAGGTTGAAGATTGAGAAGAAGGTTCTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTATTGCCCCAAATATGAGAGGATGGAAACATGGAAAGGGAGAATGGAGAATCATGGGTTTGTTGGGAGAAAAATAAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCACTGCAGTTTGAGGAAGAGGGTGGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGGAGAGTTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTCACTGTGTCATCATGGCAACCAGTTTGA 1416 0.428 MEDSEEEELLNLTLSVDAGRKRRKKGRTRDSNNNNSNTNSVIIPIKSNEGMIFRLLQMRELMLRQDHRIRKGVVEDGINNNKNGLPLIHLLLSTATAVDDQRNYCAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFGNHLVFEFQGLLRGSSRVFNLRKKKNETVAVNLVSYLNTSSCFMKASDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLKIEKKVLGKEIKSMLNYDMDGVDYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGGGFRVSERDEGRVISLGWQNRFLLTVSSWQPV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01428 471 ProSiteProfiles GRAS family profile. 78 469 IPR005202 -
Gma16g01428 471 MobiDBLite consensus disorder prediction 19 40 - -
Gma16g01428 471 Pfam GRAS domain family 87 469 IPR005202 -
Gma16g01428 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 469 IPR005202 -
Gma16g01428 471 PANTHER OSJNBA0084A10.13 PROTEIN 8 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01428 Gma-Chr16 33304923 33306594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01428 78 469 GRAS Transcription Factor Family AT1G14920 33.661 4.17e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma16g01428 GRAS 5.4e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01428 - - gmx:100798251 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01428 16 33304923 33306594 Gma16g01428 16 33304923 33306594 ECH
Gma16g01428 16 33304923 33306594 Gma02g00680 02 6560393 6561823 GST
Gma16g01428 16 33304923 33306594 Gma10g02060 10 48124784 48126181 PCT
Gma16g01428 16 33304923 33306594 Gma20g01655 20 43647188 43648576 PCT
Gma10g02060 10 48124784 48126181 Gma16g01428 16 33304923 33306594 PCT
Gma20g01655 20 43647188 43648576 Gma16g01428 16 33304923 33306594 PCT