Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01419 ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAACTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACGCCGCCGCCGCTGACACCTCCGCCGCCGCTCCTGTCCCTCCACCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCACCGACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTATGCAATTGGAATGGCTGTCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCATGACCATGAAGAAAGAGGAGCCACAATGCACCACCACCAAGGAGGACATAGCTCCTGCCCAGTTCCAGACAGCAAGCCCAGTATCAGTCCTTGAAAGCAGCAGTTTCTGCTCTGGGGAGAAGGCTGGCACGGAGATTAACATCTCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGTCCTGCAACCTTCAACCCCAATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACTGGTGAGAACACGCAGCACAACGCTGCCAACACCTCCAAGGCATCATCGGATTCCGAGAATTTCGCTGAGTCGGTGATCAAGGCTCCTAAGCAGGCCTCTGGGGAGCACAAGAAGAAAAAGAAGATCAAAGTGACGTTCCCATCAGGTCAAGAGCGGAATGCACCATCACAGGCAATTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATATCGCCCTGCAGCGAGTCCAACGTTTTGTGCGGCCATGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGGAACAAGACAGGCACCAAATCTGGCTTTGCAACTGTTTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTTGAATATATGTGA 1002 0.5509 MIGNFIDDIDCGNFFDHIDDLLEFPDDAAAADTSAAAPVPPPANFWSAESDSLPATDTVFSDNSVTDLSAELSVPYEDIMQLEWLSNFVEDSFSGGSMTMKKEEPQCTTTKEDIAPAQFQTASPVSVLESSSFCSGEKAGTEINISVPCGRARSKRPRPATFNPNPVMQLISPASSTGENTQHNAANTSKASSDSENFAESVIKAPKQASGEHKKKKKIKVTFPSGQERNAPSQAIRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAMHSNSHKKVLEMRNKTGTKSGFATVSAASPELIPNTNSSLTLEYM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01419 333 PIRSF Txn_fac_GATA_plant 2 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma16g01419 333 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Gma16g01419 333 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Gma16g01419 333 MobiDBLite consensus disorder prediction 165 199 - -
Gma16g01419 333 MobiDBLite consensus disorder prediction 151 232 - -
Gma16g01419 333 PANTHER GATA TRANSCRIPTION FACTOR 8 1 333 - -
Gma16g01419 333 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Gma16g01419 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 296 - -
Gma16g01419 333 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Gma16g01419 333 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Gma16g01419 333 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Gma16g01419 333 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01419 Gma-Chr16 33178907 33181870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01419 18 303 C2C2-Gata Transcription Factor Family AT4G32890 35.932 6.10e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma16g01419 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01419 - - gmx:100783228 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01419 16 33178907 33181870 Gma02g00672 02 6492026 6497310 GST
Gma16g01419 16 33178907 33181870 Gma10g02020 10 47672592 47675948 PCT
Gma16g01419 16 33178907 33181870 Gma20g01688 20 44066558 44068496 PCT
Gma10g02020 10 47672592 47675948 Gma16g01419 16 33178907 33181870 PCT
Gma20g01688 20 44066558 44068496 Gma16g01419 16 33178907 33181870 PCT