LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g01407	ATGAACGATCTTCTAACGGAATCATTTGAAATTCCACGTGGCCAAGGTCACGGAGGTGGTGGTGACATTGAGTTAGGAGAATATGCAAGGAATTCAGGAGACCTGGGCTTGGATAGTTTCTTCAAGAAGGTTCAAGAGCTTGATAAACAATATGCTAAGCTGGATAAGCTTTTGAAAAAGCTCCAGGATGCCCATGAGGAATCCAAAGCTGTGACCAAAGCTCCTTCCATGAAGGCTATAAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAAATTGAAGAACTGGACAAAGAGAATTTGGCAAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCATTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGTTACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGATGTTGAGAGAAAACTTCTTGATTTACAACAGATATTTCTGGATATTGCGGTGTTAGTCGACGCTCAAGGAGACATGCTTGACAACATAGAAACACAGGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGCAACAATGCCCTCCAGAAGGCAAAGAAACTACAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCATGATACTTCTCATCGTTGTTATAATCATTGTTGTTGCTGTCATCAAACCATGGGTTACCAAAAAGGGTGCATAG	927	0.4218	MNDLLTESFEIPRGQGHGGGGDIELGEYARNSGDLGLDSFFKKVQELDKQYAKLDKLLKKLQDAHEESKAVTKAPSMKAIKQRMEKDVDEVKKTAHYLKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQIFLDIAVLVDAQGDMLDNIETQVSSAVDHVQQGNNALQKAKKLQRNSRKWMCIAIMILLIVVIIIVVAVIKPWVTKKGA	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g01407	308	PANTHER	-	3	300	-	-
	Gma16g01407	308	SMART	tSNARE_6	202	269	IPR000727	-
	Gma16g01407	308	SMART	SynN_4	32	158	IPR006011	GO:0016020
	Gma16g01407	308	CDD	SNARE_syntaxin1-like	206	268	-	-
	Gma16g01407	308	SUPERFAMILY	t-snare proteins	35	262	IPR010989	GO:0016020\|GO:0016192
	Gma16g01407	308	PANTHER	SYNTAXIN	3	300	IPR045242	-
	Gma16g01407	308	Coils	Coil	44	74	-	-
	Gma16g01407	308	Coils	Coil	88	108	-	-
	Gma16g01407	308	CDD	SynN	37	194	IPR006011	GO:0016020
	Gma16g01407	308	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	207	269	IPR000727	-
	Gma16g01407	308	Gene3D	-	198	300	-	-
	Gma16g01407	308	Pfam	SNARE domain	243	295	IPR000727	-
	Gma16g01407	308	Gene3D	-	34	161	-	-
	Gma16g01407	308	Coils	Coil	136	156	-	-
	Gma16g01407	308	ProSitePatterns	Syntaxin / epimorphin family signature.	213	252	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Gma16g01407	308	Pfam	Syntaxin	39	242	IPR006011	GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g01407	Gma-Chr16	33082714	33089665	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g01407	1	308	SNARE and Associated Proteins	AT3G03800	74.351	1.32e-159	446

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g01407	K08486		-	gmx:100306329	535.798