Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01406 ATGGAAATTCAATTCCAGCATCCAAAGCAGCACTTGAGAGCAAACACATCAAAAGGAGGCAAAGTATTCAAAGGGAGAAACAACAACaaaacaaaaagcaagtatgttggggtgaggcaaagagcatcagggaaatgggttgctgagatcaaagacacaacacaaaagataagaatgtggcttggcacatatgagactgcagaggaagcagccagggcttatgatgaagctgcatgcctccttcgtggatccaacactcgcaccaacttcATCACACGTGTGTCCCTCGATTCCCCTCTCGCTTCCAGGATTCAGAATCTTCTCAACAGCAGAAATGGTACCAAAACCAAACATCAAGAACAAGATGTGGAAACTTGTCACACAAGGATCAAGAGCAACCGACAAGAGTCGTCGGTTGCTCTAGCAGAAGGAACTTGTCCTCCACAACATGATGAATTAAGATTTGAATCTTCGTTGGAAGACATGTCCACGTTTAGTATCCAACCGTATATTGATCAGGATTGTCTCCAAAAGAAAATACTTGTGGAAAACGAGAAAAAAAGAAGGGTCAACAGCACCACTAGTACTGCAAGTGCTAGTACTAGTAATAGTACTAATTCAAGCAATAATAGTGACACATGTGAGAACTCACTTTCTAGTGAGACAACACAAAACACCCAACAATTTGATGATGATGATGATGCTTATAGGCCTGATTTGAGCAATTTCATAGGGTCTGAGTCAGGTTCTCAGAACAATCCTTCATGGGGATTTGAACCTTCTTCTTTTGTTCATTTTCCATTTAGCCAAGTAATGGATGTGGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGATTTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTCACTGTTCAAGACTCTAATAATAATGTAGCTATCTGGGATTTTCCACCCTTGTGCTCATTTTTGTGTTAA 1011 0.3284 MEIQFQHPKQHLRANTSKGGKVFKGRNNNKTKSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSLDSPLASRIQNLLNSRNGTKTKHQEQDVETCHTRIKSNRQESSVALAEGTCPPQHDELRFESSLEDMSTFSIQPYIDQDCLQKKILVENEKKRRVNSTTSTASASTSNSTNSSNNSDTCENSLSSETTQNTQQFDDDDDAYRPDLSNFIGSESGSQNNPSWGFEPSSFVHFPFSQVMDVANLPDIAGLELPDFERMKVERQISASLYAINGVQEYMDTVTVQDSNNNVAIWDFPPLCSFLC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01406 336 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Gma16g01406 336 MobiDBLite consensus disorder prediction 131 151 - -
Gma16g01406 336 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gma16g01406 336 MobiDBLite consensus disorder prediction 186 254 - -
Gma16g01406 336 MobiDBLite consensus disorder prediction 1 37 - -
Gma16g01406 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 320 - -
Gma16g01406 336 MobiDBLite consensus disorder prediction 21 36 - -
Gma16g01406 336 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 320 - -
Gma16g01406 336 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gma16g01406 336 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gma16g01406 336 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Gma16g01406 336 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gma16g01406 336 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Gma16g01406 336 MobiDBLite consensus disorder prediction 191 226 - -
Gma16g01406 336 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01406 Gma-Chr16 33077675 33079032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01406 32 109 AP2-EREBP Transcription Factor Family AT5G19790 78.205 2.03e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma16g01406 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01406 K09286 - gmx:100792432 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01406 16 33077675 33079032 Gma02g00658 02 6406789 6414093 GST
Gma19g01097 19 39117775 39119016 Gma16g01406 16 33077675 33079032 PCT
Gma16g00364 16 3792474 3793313 Gma16g01406 16 33077675 33079032 PCT
Gma16g01406 16 33077675 33079032 Gma19g01097 19 39117775 39119016 PCT
Gma16g01406 16 33077675 33079032 Gma16g00364 16 3792474 3793313 PCT