Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01393 ATGGACATGGATGTTTGCCGAAATATATCAGTTTCTTCAAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTGTCATCAGAACACGGAAGTGGATTTTGGCATGGAATGGTTATCAGTGTTTGTGGAAGACTGTTTCTCTAGTAGGCCAAGTTGCCTCTTGCCACCCTCTGGTGGTGGTGTTCAAACCACAAGCACTAGCACCAAGCCTTCTTCAGGCACAATAATGCCAAGACCCCAACAAAGTCATCACTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAAAGCAAGGAGCAAGAGAAAGAGACTTTCAGCCCCTAGAACAACAAAACACACCCTAAGCACATGGTCACAACATTTCAGCTCACAGAATGATGGGGTGAGTTCTGACCCTCCTCTCTTGAAACAAGCATATTGGTTGGCTGATAGTGAACTCATAGTCCCCAAGAAGAAGGATGTTGAGCAAGAAGAGGGGGTTGTTGTGGTGGTGAAGAAGGAGAAATTGGGGGATTATTATGATGATGATGAGGGTGATGAAGTTAACAACAATAATACCAACAATAATAATAATGATAATGTGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTAGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTATTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGTTGGTGTTGCTGTTCTTTCTACAGACAAGAAGTAG 840 0.4524 MDMDVCRNISVSSSECQQELPTLDDLFCHQNTEVDFGMEWLSVFVEDCFSSRPSCLLPPSGGGVQTTSTSTKPSSGTIMPRPQQSHHCPLQNFAVPGKARSKRKRLSAPRTTKHTLSTWSQHFSSQNDGVSSDPPLLKQAYWLADSELIVPKKKDVEQEEGVVVVVKKEKLGDYYDDDEGDEVNNNNTNNNNNDNVQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVGVAVLSTDKK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01393 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 262 - -
Gma16g01393 279 Gene3D - 194 263 IPR013088 GO:0006355|GO:0008270
Gma16g01393 279 PANTHER GATA TRANSCRIPTION FACTOR 3 270 - -
Gma16g01393 279 MobiDBLite consensus disorder prediction 59 85 - -
Gma16g01393 279 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 270 - -
Gma16g01393 279 Pfam GATA zinc finger 204 238 IPR000679 GO:0006355|GO:0043565
Gma16g01393 279 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355|GO:0043565
Gma16g01393 279 MobiDBLite consensus disorder prediction 99 133 - -
Gma16g01393 279 MobiDBLite consensus disorder prediction 184 198 - -
Gma16g01393 279 MobiDBLite consensus disorder prediction 111 133 - -
Gma16g01393 279 CDD ZnF_GATA 203 250 IPR000679 GO:0006355|GO:0043565
Gma16g01393 279 MobiDBLite consensus disorder prediction 60 85 - -
Gma16g01393 279 MobiDBLite consensus disorder prediction 174 198 - -
Gma16g01393 279 ProSiteProfiles GATA-type zinc finger domain profile. 202 234 IPR000679 GO:0006355|GO:0043565
Gma16g01393 279 SMART GATA_3 198 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01393 Gma-Chr16 32945406 32947273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01393 38 266 C2C2-Gata Transcription Factor Family AT4G32890 40.948 3.00e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma16g01393 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01393 - - gmx:100776805 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01393 16 32945406 32947273 Gma02g00646 02 6315396 6317093 GST
Gma19g01071 19 38793033 38794483 Gma16g01393 16 32945406 32947273 PCT
Gma16g00382 16 3983280 3984753 Gma16g01393 16 32945406 32947273 PCT
Gma16g01393 16 32945406 32947273 Gma19g01071 19 38793033 38794483 PCT
Gma16g01393 16 32945406 32947273 Gma16g00382 16 3983280 3984753 PCT