Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01390 ATGGAGAATGATATAGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAGTGATGATGAGAACATATGCCCTTTTTGTGAGACAGAAATTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTGTTGACTTAAGGTCAGCTTGGGTGTTCTCACTCTACGCCCCGATTTTTCTCGGTTTGATGGGTGTTTTCAGCCCTTCCCTAGCAAGAATTGCTTCACATGGAGGCAGCAGCTCAAGGGGGGTGGAAGAAGAGGTTGAGCAAGAGAGGGAAAATGAGCTTGTGCTTGGGAGAAGGAGAAGAACTTCAACTTACATGATGCACCTCTTTCGTGGTCTTCACGTTAGGATGGTGTCTGAACTTGAAAACCCTGAAGACAATAGGAACATGGATGGCAGAAGCATACTTGTGATTGATCCATTCAGTGAAGGTGCATTGATTTTGAGGGGCCCTAACTTGAGCCACACAAGTAGCCCAAATGAGAGTAATGCTGTTGGCAGCTCCTTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTACAGCATTTGGCTCAGATTGGTCCTGGTGGGTATTCAAGTGTGAACCCTCCGGCACAGAAGGCGGCAATTGAGGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGGTTGGGAGTGAAGCAAAGGAGATGCCATGTAAGCACAAGTTCCATGGTGATTGCATTGTCTCATGGCTCAAACTTCATGGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTCAACTCTTGAAGCCAATGTGGGAGTTGGAAATGGGGACAATCAGAACAGTGAGCTGGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAACTGGTTTCCTGTGCTGCAATCATTTAACAATTTTCTTCCTTATCCTTGA 969 0.4613 MENDIEGVHWCNICSKMVNPMSDDENICPFCETEISEVMDNLRDQNDVVDLRSAWVFSLYAPIFLGLMGVFSPSLARIASHGGSSSRGVEEEVEQERENELVLGRRRRTSTYMMHLFRGLHVRMVSELENPEDNRNMDGRSILVIDPFSEGALILRGPNLSHTSSPNESNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYSSVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGSEAKEMPCKHKFHGDCIVSWLKLHGSCPVCRFQMPSEDSTLEANVGVGNGDNQNSELVRAGEERPRNGRRNWFPVLQSFNNFLPYP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01390 322 SMART ring_2 226 266 IPR001841 -
Gma16g01390 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 321 - -
Gma16g01390 322 SUPERFAMILY RING/U-box 216 273 - -
Gma16g01390 322 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Gma16g01390 322 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 321 - -
Gma16g01390 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 273 IPR013083 -
Gma16g01390 322 Pfam Ring finger domain 225 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01390 Gma-Chr16 32917151 32918119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01390 89 285 C3H Transcription Factor Family AT1G26800 31.313 3.49e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01390 K11982 - gmx:100790855 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01390 16 32917151 32918119 Gma02g00643 02 6289128 6290087 GST