Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01369 ATGACTGATTCTGACGCCAATCACAATGACCCATCTCTCGATACCGATGCTGAGGCACCCAATGATGTAGAAGATGATGTCAAGTTGAGGTCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGTGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAGTGCAAACAAGCACTGCTTTGCAGGATTGCCAAATCGTTGTCTCCACCACCTAAAacgattcctgcagctgatgagtgcttttatgttagagattctgatttcaaatcagggactgtatctatgggtagtgatcttagaaagaaacttgatattcgtgtgaagggtgatGTAGTGGCACCAGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTCCACAACATAGAAGCAGCAGGATATGAAATGCCTACACCTGTCCAGATGCAAGCAATCCCGGCTGCTTTGACGGGAAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCGATAGTTTCTCGTTGTGTGATTCATCGTCGACAATATTTTTCAGGTAAGAAGAAGCCTTTAGCTATGGTGTTAACCCCCACCAGAGAGCTCTGCATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGGTTACCTTTCAAAACCGCTCTTGTGGTTGGTGGTGATGCCATGGCAGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCGGGAAGGCTGGTTGATCTTTTAATGAAGCATGAGATTGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAACGATTTAGAGAAAATGATTAACACTCTAGCAAAAGGTATGGTGGTTATGTCTATTGGAGAACCTAATACGCCGAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGAAATTTTGGCAAGTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTTGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTGCCACAGGAATTAAAGCAGTTTCCATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAACAATGCAGTCCTTTTTGGTGGGTGAGGTCCCCGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTACTTGGTGTAAGACAGGTGATTGTATTTGACATGCCTAATAACATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGGGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAATTAATTGATGTTCTGAAATCTGGTGGGGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTATGCCACAAGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1587 0.4152 MTDSDANHNDPSLDTDAEAPNDVEDDVKLRSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRIAKSLSPPPKTIPAADECFYVRDSDFKSGTVSMGSDLRKKLDIRVKGDVVAPVLSFSACNLPDKLLHNIEAAGYEMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIVSRCVIHRRQYFSGKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGMVVMSIGEPNTPNKAVKQLAIWVESKQKKQKLFEILASKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERRETMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNNIKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELIDVLKSGGAAVPRELANSRYATRVFSGGKGSKKRKHTG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01369 528 CDD SF2_C_DEAD 347 479 - -
Gma16g01369 528 Pfam HIT zinc finger 42 68 IPR007529 -
Gma16g01369 528 Gene3D - 98 336 IPR027417 -
Gma16g01369 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Gma16g01369 528 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 515 - -
Gma16g01369 528 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 23 515 - -
Gma16g01369 528 Pfam Helicase conserved C-terminal domain 359 470 IPR001650 -
Gma16g01369 528 SMART helicmild6 388 470 IPR001650 -
Gma16g01369 528 Gene3D - 337 511 IPR027417 -
Gma16g01369 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 336 IPR027417 -
Gma16g01369 528 MobiDBLite consensus disorder prediction 1 23 - -
Gma16g01369 528 Pfam DEAD/DEAH box helicase 152 323 IPR011545 GO:0003676|GO:0005524
Gma16g01369 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Gma16g01369 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 484 IPR027417 -
Gma16g01369 528 SMART ultradead3 147 350 IPR014001 -
Gma16g01369 528 Gene3D - 24 80 - -
Gma16g01369 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 509 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01369 Gma-Chr16 32649520 32651720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01369 129 490 Eukaryotic Initiation Factors Gene Family AT1G72730 31.880 1.65e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01369 K19466 - gmx:100784491 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01369 16 32649520 32651720 Gma02g00614 02 6057118 6059472 GST