Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01360 ATGAAACCCTACACGTCATCACCATCATCCTCCAAGTCCAAAAAGAAGCCAACAACAACACAACAAGATCATGAAACAGCATGGGGAGGAAGGTACCTTGGAGTGAGGAGGAGGCCATGGGGAAGGTATGCGGCCGAAATTCGCGACCCTTCCACTAAGGAAAGACATTGGTTGGGCACGTTTGATACCGCAGAAGAGGCCGCCCTAGCATATGATAAGGCGGCCCGCTCCATGCGGGGCTCACGTGCTCGAACCAACTTCATCTATCCGGATACTCCTCCGGGTTCTTCTGTCACCTCCATCCTCTCTCCAGACGAGCAAACCCAAACCCAAATCCACCAGGCCCAAGAAGAGCTCTCCTCTCTATTCAACCCAAACCCGTTTCCACAACCTGACCCGAACCCGCAATTTTCCTTATGCGGGTTTTCGGGTATCCCGAACACTCCTACATTTTCTGCCACCGAAGAAATTGCCTCATCCGGTGGCTATAGCTACAGTTATGGATACACCGAAGGAGGAACCGGCGTGGAGAGTTCACATTTTAAGCTCTTTGATGATGGTGAAACGCAGCTTCCACCATTGCCACCGGATATCACAAGCTCCATGGGCTATGAAATGAGTAATGGGCTTTATGGAAACGATGTCGGGTTTTCGGATCCAAGTTGCGGAGCTAATGCTTCCGGGTCGGGTTACCCGTATTCGGGGTTCGAATCAGGTGATTACGTGGTGCATAGTCCACTCTTTAGTGCAATGCCATCAGTGTCAGATAATGTGGCAACGGGCCATGAGGGTTTTGATTTGGGAAGCTCTTCTTATTTCTTCTGA 825 0.5067 MKPYTSSPSSSKSKKKPTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRGSRARTNFIYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFPQPDPNPQFSLCGFSGIPNTPTFSATEEIASSGGYSYSYGYTEGGTGVESSHFKLFDDGETQLPPLPPDITSSMGYEMSNGLYGNDVGFSDPSCGANASGSGYPYSGFESGDYVVHSPLFSAMPSVSDNVATGHEGFDLGSSSYFF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01360 274 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 9 274 - -
Gma16g01360 274 MobiDBLite consensus disorder prediction 1 30 - -
Gma16g01360 274 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 MobiDBLite consensus disorder prediction 1 26 - -
Gma16g01360 274 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Gma16g01360 274 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Gma16g01360 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 274 - -
Gma16g01360 274 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01360 Gma-Chr16 32572556 32573850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01360 9 265 AP2-EREBP Transcription Factor Family AT5G13910 42.802 2.09e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma16g01360 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01360 K09286 - gmx:100809600 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01360 16 32572556 32573850 Gma02g00605 02 6017915 6018739 GST
Gma16g00417 16 4436663 4437782 Gma16g01360 16 32572556 32573850 PCT
Gma16g01360 16 32572556 32573850 Gma16g00417 16 4436663 4437782 PCT