Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01349 ATGAGTACCAACCAAAACACCACCTTCTTCCCCCTCCCACATGGCCAAATAACTACTTCTGAATTTGTTAATAGCCAGAACAATCCATCCCAGGCTACAAATCAAGGCATTGATGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCTATGGCTTATGATGCTGCTGCATTGAGGTTCAAAGGAAACAAAGCAAAGCTCAATTTTCCTGAACGTGTTGTTATGCCAATACCATCACAAACCAATACCAATTACAATAATAACAATACCACTTCTTCATCATCAGCTCCTACTACACAACCTTCTTCTCTTCCACCACCACCATCACAATCTCTACAAAATAGTAGCAATAATAATAGTTCTCTTTCATCAGAAGGGTTTCCAAATCTTGAGGAGTATGCAAGGTTGCTGAATTGTAGCGATGATGATGACTTTCAACGTGTTGCATTGGGGCTCTACCAGCATCACAATAATGAGGATTATATTTATGGTTCATCACAACCACCACCAGTGCCGTTTTTTGTGTCTTCTTATTCTTCTTCTTCTTCTGCAATGGCATCTTCATTTTCTGATTTTCTTGGTCAAGGAGGGAGTGGTTTTGATGAAGAGAATAAGAGGGGGTCGTAG 720 0.4181 MSTNQNTTFFPLPHGQITTSEFVNSQNNPSQATNQGIDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPSQTNTNYNNNNTTSSSSAPTTQPSSLPPPPSQSLQNSSNNNSSLSSEGFPNLEEYARLLNCSDDDDFQRVALGLYQHHNNEDYIYGSSQPPPVPFFVSSYSSSSSAMASSFSDFLGQGGSGFDEENKRGS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01349 239 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Gma16g01349 239 MobiDBLite consensus disorder prediction 108 130 - -
Gma16g01349 239 PANTHER DNA-BINDING DOMAIN 14 235 IPR044808 GO:0003700|GO:0009873
Gma16g01349 239 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Gma16g01349 239 MobiDBLite consensus disorder prediction 140 156 - -
Gma16g01349 239 MobiDBLite consensus disorder prediction 108 156 - -
Gma16g01349 239 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Gma16g01349 239 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 14 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01349 Gma-Chr16 32442694 32444874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01349 33 136 AP2-EREBP Transcription Factor Family AT5G61890 63.462 1.19e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g01349 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01349 - - gmx:100806383 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01349 16 32442694 32444874 Gma02g00593 02 5919809 5921967 GST
Gma16g01349 16 32442694 32444874 Gma16g00430 16 4586155 4590176 PCT