Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01347 ATGCTTCCAACGAGAGCTCTCACTCACACTCTCGGCGTTCCCTGGACGGAGCCCGAAAACGACGCCGTTACAGGGGACGCCGCTCTCTTAGCGTCGTTCAAGTCAATGCTGGACCGTGACTGGTACATGGACCAACCTCACTGTGATTTTCTCCAAAACGACGCTGCGTTTTTGGAGCACCCTTTGGGTTCGTCTTCTTCTTCTTCTTCTTCTTCTCTGCCTCAGCAGCAACACTTCGTGGTGCCGCCAAAACCGTGCTACTTCAACGTGAACGGGAATGGTCCTTTGGAATGTGGCTTCGAGTTGGGGTCTCAGAGCAGTTTCCTCGCCCCGTTTCCCGTGAACGCGCTCGAGCTCAGTCTGGACCCCGAGTTCCCGGCGAGCAAACCCGGTGGTGGGTTGATTCGCCGGGAAGAGAAGCAGCGGCCTCTCGACGCACTTGCTCCATCCACTCTGTATCAGAAGCGGACGGAGCGGTGGCGAGAGGCCGGGAAGGCGGAGGAATTGGCGATGCCGCCACCGCCGCCACCGCAGTTGGCGATGGAGAAGAGGAGGAAGAGGGGTGAGGAGGGGGAGGATGAGGGAGGGTTGAATTATGAGTCtggtgaggatatgaagttggaggagaatggtgttgatgcaaataacaatgataatgataatgatgatgatgatgatgatggtgatggtgataatgggaatgggaatggtggtggtggtggtggagaccagaaggggaagaagaagaagaggaagaagatgccggcgaAGAATCTCATGGCGGAGAGGAGGCGGAGGAAGAAGCTCAATGATAAGTTGTACATGTTAAGGTCTGTTGTGCCTAATATTAGCAAGATGGATAGGGCCTCAATACTAGGGGATGCCATTGACTACTTAAGGGAGTTACAAGTGCGAATTACTGATCTTAATCATGAACTAGAGTCAGGCCCGCCTGGCTCATCCCTTCCACCTGCTGCAAGCTTTCACCCTGTGACACCCACTCTGCCTACCCTTCCCTGCCGGGTGAAGGAAGAAATATGTCCTATCTCTCTGCCAAGTCCTAAAAACCAATCAGCAAAGGTGGAGGTTACGGTAAGGGAAGGGGGAGCTGTCAATATCCATATGTTTTGTGCCCACAGACCAGGTCTTTTACTTTCTACCATGAGGGCAATGGATAGCCTTGGATTGGATGTTCAGCAGGCCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAGCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGTTGGACACAGCAGGTTTCCATGGAATGATGTGA 1335 0.4622 MLPTRALTHTLGVPWTEPENDAVTGDAALLASFKSMLDRDWYMDQPHCDFLQNDAAFLEHPLGSSSSSSSSSLPQQQHFVVPPKPCYFNVNGNGPLECGFELGSQSSFLAPFPVNALELSLDPEFPASKPGGGLIRREEKQRPLDALAPSTLYQKRTERWREAGKAEELAMPPPPPPQLAMEKRRKRGEEGEDEGGLNYESGEDMKLEENGVDANNNDNDNDDDDDDGDGDNGNGNGGGGGGDQKGKKKKRKKMPAKNLMAERRRRKKLNDKLYMLRSVVPNISKMDRASILGDAIDYLRELQVRITDLNHELESGPPGSSLPPAASFHPVTPTLPTLPCRVKEEICPISLPSPKNQSAKVEVTVREGGAVNIHMFCAHRPGLLLSTMRAMDSLGLDVQQAVISCFNGFSLDVFRAEQCREGQDVLPEQIKEVLLDTAGFHGMM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01347 444 MobiDBLite consensus disorder prediction 180 213 - -
Gma16g01347 444 Pfam Helix-loop-helix DNA-binding domain 260 303 IPR011598 GO:0046983
Gma16g01347 444 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 139 444 - -
Gma16g01347 444 MobiDBLite consensus disorder prediction 245 263 - -
Gma16g01347 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 320 IPR036638 GO:0046983
Gma16g01347 444 MobiDBLite consensus disorder prediction 215 231 - -
Gma16g01347 444 CDD ACT_UUR-ACR-like 373 433 - -
Gma16g01347 444 Gene3D - 242 304 IPR036638 GO:0046983
Gma16g01347 444 CDD bHLH_AtAMS_like 258 327 - -
Gma16g01347 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Gma16g01347 444 PANTHER BHLH TRANSCRIPTIONAL FACTOR 139 444 - -
Gma16g01347 444 MobiDBLite consensus disorder prediction 123 266 - -
Gma16g01347 444 SMART finulus 259 308 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01347 Gma-Chr16 32398480 32402630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01347 31 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 43.167 1.13e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g01347 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01347 - - gsj:114390091 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00447 16 4789526 4793124 Gma16g01347 16 32398480 32402630 PCT
Gma16g01347 16 32398480 32402630 Gma16g00447 16 4789526 4793124 PCT