Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01309 ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCAGAAAATCATGATTGTTCAGCGGATGATTTGATGGATATTGAGAAAGAAGAAATTGATCGGGCCATAGCACTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGCTGAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACAGTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATTCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTCTGCAAGAAATTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATACCAAGTATCTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTGGAAATACAAGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACGAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCCCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCAtcatcgtcatcatcatcttcatcttcctcatcctcttcatcaccttcgtcctcttcatcatcAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGTTTTCCATATTGA 1590 0.4069 MGWFTKLLKGSNRKSSGGRYHGKYEDDRISENHDCSADDLMDIEKEEIDRAIALSLSEADQKGKKVIEDDSESEDDELCPLSDEEAECVEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSDSDSLFQPFAHLFPPVYRICAGCNSEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKKFIPPNSAGLIEYRAHPFWRQKYCPSHEGDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKYGLRRTLDHIRLTGSFPY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01309 529 Pfam LIM domain 157 211 IPR001781 -
Gma16g01309 529 CDD LIM_DA1 157 209 - -
Gma16g01309 529 SMART lim_4 156 208 IPR001781 -
Gma16g01309 529 PANTHER PROTEIN DA1-RELATED 2 1 529 IPR045218 -
Gma16g01309 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 240 - -
Gma16g01309 529 Gene3D Cysteine Rich Protein 153 214 - -
Gma16g01309 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 116 135 IPR003903 -
Gma16g01309 529 MobiDBLite consensus disorder prediction 445 471 - -
Gma16g01309 529 Pfam Protein DA1 306 524 IPR022087 -
Gma16g01309 529 ProSitePatterns LIM zinc-binding domain signature. 157 191 IPR001781 -
Gma16g01309 529 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
Gma16g01309 529 MobiDBLite consensus disorder prediction 444 477 - -
Gma16g01309 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 182 - -
Gma16g01309 529 SMART uim 43 62 IPR003903 -
Gma16g01309 529 SMART uim 116 135 IPR003903 -
Gma16g01309 529 MobiDBLite consensus disorder prediction 9 30 - -
Gma16g01309 529 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01309 Gma-Chr16 31745913 31750281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma16g01309 DA1-like 9.9e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01309 - - gmx:100813890 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01309 16 31745913 31750281 Gma16g01309 16 31745913 31750281 ECH
Gma16g01309 16 31745913 31750281 Gma02g00547 02 5427287 5432453 GST
Gma01g01828 01 53874607 53882301 Gma16g01309 16 31745913 31750281 PCT
Gma11g00574 11 4796617 4801426 Gma16g01309 16 31745913 31750281 PCT
Gma16g01309 16 31745913 31750281 Gma01g01828 01 53874607 53882301 PCT
Gma16g01309 16 31745913 31750281 Gma11g00574 11 4796617 4801426 PCT