Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01308 ATGGTGGCTATTTGGTTGAGGTGTGGTGATGATGGTGAACTAGTGGTTGAGGTGCAATTCAGGTTCATGGTTTTGATGTTGGTGTTTAGTGATGAAGAGTGGTCGTGGAGCGAGCGAGTGATGCTCATCACATCATGTGCTTCCAAAACTGATCTATTTCCCTTCTCCTTCTTACTTCTGTCGTTCTCTCTGCTGCAAATCCAAAAACCACCAAATCGCGGTTCCAAATTGCAATTTCTCGAGCGAACTTTGCGAGTTCTAGGGTTCCCCCACTGCCATGGACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACCGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAAGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTAGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCAGAGTTTAAAAGCACAGGCGTGGAGTGATGAGGACTTGTTGGAGGCCCTAAATTCCCTGGAAGAAGGGCTTAAGGATAATATCAAGAGACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGGATCATTGTGTCAGACCTTAAGGCAAAAGAACGAGTGATGAAACTAATGAATCATGAAAATGCTGAAGTTACTAAAAATGCACTGCTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGATTTCGGTTCCAACAGTAGCAGAAATTTTATGTGAGGAATAA 1578 0.4297 MVAIWLRCGDDGELVVEVQFRFMVLMLVFSDEEWSWSERVMLITSCASKTDLFPFSFLLLSFSLLQIQKPPNRGSKLQFLERTLRVLGFPHCHGPGRINLRTGSEEGHPMGDLHLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLRNWFIQEKSCKILALIVSVRPKNQNGIVSNGEASNGKKPFTTIDDVLIGLVKWLCDQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVRADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLAQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKRLSSFDMYKQEVLLGHLDWSPMHKDPIFWRENINNFEENDFQILRVLITILDTSNDPRTLAVACYDLSQFIQCHSAGRIIVSDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQISVPTVAEILCEE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01308 525 Pfam V-ATPase subunit H 391 502 IPR011987 GO:0000221|GO:1902600
Gma16g01308 525 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 114 513 - -
Gma16g01308 525 Pfam V-ATPase subunit H 114 384 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gma16g01308 525 Gene3D - 111 392 IPR011989 -
Gma16g01308 525 SMART arm_5 463 503 IPR000225 GO:0005515
Gma16g01308 525 SMART arm_5 302 343 IPR000225 GO:0005515
Gma16g01308 525 SMART arm_5 256 301 IPR000225 GO:0005515
Gma16g01308 525 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 114 513 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gma16g01308 525 SUPERFAMILY ARM repeat 115 503 IPR016024 -
Gma16g01308 525 Gene3D - 404 505 IPR038497 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01308 Gma-Chr16 31734575 31741161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01308 114 512 Primary Pumps ATPases(2) AT3G42050 77.475 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01308 K02144 - gmx:100788723 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01308 16 31734575 31741161 Gma02g00546 02 5419613 5425656 GST