Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01296 ATGGAGCAAGAAAATCAATTCTTCTCACTCTCAGACCCTAATCTCATCCTTCGTCTCTCACTATCAATGGGTGGCTCCATAGAGAACACTAGATTTGGGGCAAGTGATGATGATGCTACTAAAGTAGAGGATGATTTTGTCTTTGATATAGATCCTAGCTTGCTAGTGGATTCCCGCAAACTTTTAATTGGCGAACTGATTACAGAACATTCACATTCCATTGTCTACCATGGATGGTATGAATTCAATCCTGTATCTATAAAGCTTATGCTTCCAATGCAAACATCACATGCTACTTCTCAATGTAAAGCAAAGTTTCAACGGGAGGTGAACTTGATATCTAGGGTTAAACATAAAAATATTATAAAGTTTATTGGTGTCTCTGTGGAACCATCGATGATGATAATTACAGAACTTTTGGAAGGTTGTTCACTTCAAAAATATCTAGAGAGCATTTATCCAAGTACTCTAAGTTTAGAGCAATCAATAAGTTTTGCTATGAATATTTCTCAAGTTATGGAGTATTTGCATGAAAATGGCATTATTCATCGGGATCTAAAGCCTGGTAATTTGTTTCTTCCTAAAGACAACATGCAAGTTCTACTTACAAATTTTGAGACAGCTAGAGAGGTGATATCTAGTGAAATGACTTCTGAGGTTGGTACATATCGATATATGGCTCCTGAGTTATTCAGTAAAGATCCACTTTCAAAAGGAGCAAAGAAATGTTATGACCATAAGGCAGATGTTTATAGCTTTTCTATGGTTCTATGGGCGTTAATAAAAAATCAAACTCCATTTAAAGGAAGGAGTAACTTGTTAGCAGCATATGCTACTGCAAAAAACATGAGACCTAGTGTGGAGGAGTTTCCAGAAAATCTTCTCCCTTTATTGCAATCATGTTGGGAAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATAACTCAAACCCTTGCAAAACTTCTCCACAATTATCACTCAATAAGGATAACGCCTAAGGAAGAAAATTGTCCAACTACAAGTGTGTCAAAACCTATCATCGATTGTGTTGAAGACAACTCCAAACATGTAGATGAGGTCGAGAGTCAGAATATCAATGTTTGCACAAAGGGACAATCTCAGAGCATAATACAAATCCCTAGTCCAATCTTAGCCCAAAACAAGCCTAAAAAGATTTTTAGGAAGTGCAAGTGTTTATGGTTATGTTTGCGCAAATGCTTTGACATTTGTTGA 1236 0.3673 MEQENQFFSLSDPNLILRLSLSMGGSIENTRFGASDDDATKVEDDFVFDIDPSLLVDSRKLLIGELITEHSHSIVYHGWYEFNPVSIKLMLPMQTSHATSQCKAKFQREVNLISRVKHKNIIKFIGVSVEPSMMIITELLEGCSLQKYLESIYPSTLSLEQSISFAMNISQVMEYLHENGIIHRDLKPGNLFLPKDNMQVLLTNFETAREVISSEMTSEVGTYRYMAPELFSKDPLSKGAKKCYDHKADVYSFSMVLWALIKNQTPFKGRSNLLAAYATAKNMRPSVEEFPENLLPLLQSCWEEDPKLRPEFSEITQTLAKLLHNYHSIRITPKEENCPTTSVSKPIIDCVEDNSKHVDEVESQNINVCTKGQSQSIIQIPSPILAQNKPKKIFRKCKCLWLCLRKCFDIC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01296 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Gma16g01296 411 Gene3D Phosphorylase Kinase; domain 1 51 141 - -
Gma16g01296 411 SUPERFAMILY Protein kinase-like (PK-like) 58 337 IPR011009 -
Gma16g01296 411 PRINTS Tyrosine kinase catalytic domain signature 137 150 IPR001245 GO:0004672|GO:0006468
Gma16g01296 411 PRINTS Tyrosine kinase catalytic domain signature 175 193 IPR001245 GO:0004672|GO:0006468
Gma16g01296 411 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Gma16g01296 411 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Gma16g01296 411 Pfam Protein tyrosine and serine/threonine kinase 69 319 IPR001245 GO:0004672|GO:0006468
Gma16g01296 411 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 3 355 - -
Gma16g01296 411 Gene3D Transferase(Phosphotransferase) domain 1 142 358 - -
Gma16g01296 411 SMART serkin_6 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01296 411 ProSiteProfiles Protein kinase domain profile. 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01296 411 PANTHER SERINE-THREONINE PROTEIN KINASE 3 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01296 Gma-Chr16 31570639 31578492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01296 44 360 MAP Kinase Kinase Kinase AT5G66710 50.000 1.08e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma16g01296 PK_Tyr_Ser-Thr 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01296 - K04427 gmx:106796450 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01296 16 31570639 31578492 Gma16g01296 16 31570639 31578492 ECH