Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01293 ATGAGAGTTCCCTCATCCCCACAACCCAACAACAACCATTCCCCTACCTCAAACCTCGTCCTCCACACAAACAACAACCCTACTACAACCTTCACCTACGAACCCACCTCGGTCCTTGACCTCTGCCGGAGCCCGAGCCCCGAAAAAAAACTCACTGTTCCCAAGCCAGAACCACAACACAACAACAACAACAACAACCTAAACCTAGACCTGGATGATCATGTCTTGCCTAATTCGGATTGGTGGGAGTCCATCATGAAGGACTTAGCCCTACCCGAAGACTCTCCCACACCCCTTTTGAAGACCAACATCAATCCATCATGCATCCCTGATTTCCCACCTTCTTCTCAAGACCCACCCTTTGATCACCCCCAAGATTTCACCTCTCTCTCAGAAATCTACAACCAAAACCTACCCTACAATTACCCCACCAACACTTTAGAACATTCCTTTTACGACCTAAGCCATAACCACCACCACAACAACAACAACAACGTTAACAACAACAATTGGGACTTCATCGAAGAGCTTATCCGTGCCGCCGATTGCTTCGACAGCAGCCACTTCCAGCTGGCTCAAGCCATACTGGAGCGGCTCAACAACCGGCTCCTTCGCTCTCCCATGGGCAAGCCGCTCCACCGAGCCGCGTTTCACTTCAAAGACGCGCTCCAGTCCATTCTCGCCGGTTCGAACCGGACCAGTTCGAACCGCCTCTCCTCCATGGCTGAGATTGTTCAGACAATTAAAACGTACAAAGCCTTTTCGGGAATTTCACCGATCCCAATGTTCTCCGTTTTCACAACCAACCAAGCCCTACTTGAAACCTTAAATGGATCTTCATTTGTCCACGTCATCGATTTCGAGATCGGCCTAGGGATCCAGTACGCTTCTCTCATGAAAGAGATTGCCGAGAAGGCCGGCGCCGGAGCCTCGCCGCTCCTCCGCATCACCGCCGTCGTGCCGGAGGAGTACGCCGTCGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAGTTCGCGCAGGATCTAGGGATCAGCGCGCAGGTGGACTTCGTGCCGCTTCGGACCTTCGAGACGGTGTCGTTCAAGGCCGTGAGGTTCGTCGACGGCGAGAAGATCGCCGTGTTGCTGTCACCGGCGATTTTCAGCCGCCTCGGAAGCAACGGAGGCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGGTGTCGCCCGGAGTGGTGGTTTTCGTCGATGGCGAGGGGTGGACGGAGGCGGCGGCGGCGGCGTCGTTCCGACGCGGGGTGGTGAGCAGTCTAGAGTTTTATTCCATGATGCTGGAGTCGCTGGACGCGTCGGTGGCGGCGGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGATGCTGCTGCGGCCAAAGATCTTCGCCGCGGTGGAAGGCGCCCGGCGGAGGACGCCGCCGTGGAGGGAGGCGTTTTACGACGCCGCAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTATCAGGCCGAGTGTTTGCTTGCGAAGGTGCAAATCAGAGGCTTCCACGTGGACAAACGACATGCTGAGTTGGTGCTCTGCTGGCACGAACGAGTCATGGTTGCCACGTCAGCATGGCGGTGTTAG 1623 0.5662 MRVPSSPQPNNNHSPTSNLVLHTNNNPTTTFTYEPTSVLDLCRSPSPEKKLTVPKPEPQHNNNNNNLNLDLDDHVLPNSDWWESIMKDLALPEDSPTPLLKTNINPSCIPDFPPSSQDPPFDHPQDFTSLSEIYNQNLPYNYPTNTLEHSFYDLSHNHHHNNNNNVNNNNWDFIEELIRAADCFDSSHFQLAQAILERLNNRLLRSPMGKPLHRAAFHFKDALQSILAGSNRTSSNRLSSMAEIVQTIKTYKAFSGISPIPMFSVFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAGAGASPLLRITAVVPEEYAVESRLVRENLNQFAQDLGISAQVDFVPLRTFETVSFKAVRFVDGEKIAVLLSPAIFSRLGSNGGSVGAFLADVRRVSPGVVVFVDGEGWTEAAAAASFRRGVVSSLEFYSMMLESLDASVAAGGGGEWVRRIEMMLLRPKIFAAVEGARRRTPPWREAFYDAAMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERVMVATSAWRC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01293 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 539 IPR005202 -
Gma16g01293 540 MobiDBLite consensus disorder prediction 1 68 - -
Gma16g01293 540 Pfam GRAS domain family 174 539 IPR005202 -
Gma16g01293 540 MobiDBLite consensus disorder prediction 1 39 - -
Gma16g01293 540 ProSiteProfiles GRAS family profile. 164 539 IPR005202 -
Gma16g01293 540 PANTHER SCARECROW-LIKE PROTEIN 15 6 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01293 Gma-Chr16 31536381 31538343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01293 68 539 GRAS Transcription Factor Family AT4G36710 54.397 1.09e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma16g01293 GRAS 2.2e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01293 - - gmx:100785004 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01293 16 31536381 31538343 Gma16g01293 16 31536381 31538343 ECH
Gma16g01293 16 31536381 31538343 Gma02g00533 02 5297777 5299806 GST
Gma01g01806 01 53671240 53673178 Gma16g01293 16 31536381 31538343 PCT
Gma11g00598 11 5008427 5009977 Gma16g01293 16 31536381 31538343 PCT
Gma16g01293 16 31536381 31538343 Gma01g01806 01 53671240 53673178 PCT
Gma16g01293 16 31536381 31538343 Gma11g00598 11 5008427 5009977 PCT