Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01291 ATGCCGGTTGATTTGGACAACGCTTCCACAGCTTCAGGGGAAGCCGCCAGCGTCTCTTCCTCCGGCCACCAAACAAAACCCGCCGTCCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAAACcgtttcgtgtgcgagatatgcaacaagggattccagagggaccagaatctgcagcttcaccggcggggccacaacctgccgtggaagctgcggcagaggTCAAGCAAGGAGGTGCGAAAGAGAGTGTACGTGTGCCCCGAGCCCACGTGCGTGCACCACGACCCTGCCAGAGCTTTAGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGGAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGAGAACGTGAGATCTCACGCTGTTGTGAAAGATAATTCGGAGAATGATTCCAAGGTTTTAACCTTAACCGGTGATTCGCCACCGCTACAGCCTGTCTCTGCAACGGTGGCTACTACTACTACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGCTACTGCTGTAAGTGGGAGCTGTGGCAGCAACAGCACCTGCTCAACAAGCAATGGCGGTGCTACTAGTAATAGCAATAGTAGTAGTAGTGTGTTTGCGGGTTTATTTGCTTCTTCAACAGCATCTGGGAGCCTACAATCTCAAACACCAGCATTCAGTGACTTAATTAGAGCCATGGGGCCTCCGGAACACCCTGCAGATCTTATCTCAGCTCCTTCATCATCCGAGGCCATATCTCTTTGCCTCTCCACCACCAGTGCCTCACCAATCTTCGCAACAGGAGGCCAACAGTATGTGTCGTCGCCACCGCAGCCTGCCATGTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAAATGGGTGCTGCTGCCACAAACGCCTCCCTTCTTCGTGGGTTTGGTATTGTGTCATCATCATCTTTGGCTTCGACCTCATCGGGGCAGCAAAATGGCCTGCAATGGGGCCAGCAGCAGTTAGAATCCGAGAGCGGCTCCGTTCCTGCAGCAGGGCTAGGACTTGGTCTTCCATGTGAAGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGAACACCCTCAATGTTTGGTCCTAAACACACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGCACTGCTGGTGGAGGCTTATCTGCACTTATCACATCTATTGGTGGTGGTTTGGATGTAACTGCAGCCTTTGGCAATGGAGATTTTTCTGGCAAAGATATTGGAGGTAGCTCTTGA 1536 0.4909 MPVDLDNASTASGEAASVSSSGHQTKPAVPKKKRNLPGMPDPEAEVIALSPTALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDVLAEENVRSHAVVKDNSENDSKVLTLTGDSPPLQPVSATVATTTTQTNSAMSCGLQTQNLELPETNPPQVIEEEPQGATAVSGSCGSNSTCSTSNGGATSNSNSSSSVFAGLFASSTASGSLQSQTPAFSDLIRAMGPPEHPADLISAPSSSEAISLCLSTTSASPIFATGGQQYVSSPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSLASTSSGQQNGLQWGQQQLESESGSVPAAGLGLGLPCEDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAFGNGDFSGKDIGGSS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01291 511 Gene3D Classic Zinc Finger 42 106 - -
Gma16g01291 511 Gene3D Classic Zinc Finger 115 193 - -
Gma16g01291 511 MobiDBLite consensus disorder prediction 260 285 - -
Gma16g01291 511 MobiDBLite consensus disorder prediction 1 43 - -
Gma16g01291 511 MobiDBLite consensus disorder prediction 265 285 - -
Gma16g01291 511 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gma16g01291 511 MobiDBLite consensus disorder prediction 407 425 - -
Gma16g01291 511 MobiDBLite consensus disorder prediction 10 26 - -
Gma16g01291 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gma16g01291 511 MobiDBLite consensus disorder prediction 407 427 - -
Gma16g01291 511 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Gma16g01291 511 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 510 - -
Gma16g01291 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 510 - -
Gma16g01291 511 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Gma16g01291 511 SMART c2h2final6 101 131 IPR013087 -
Gma16g01291 511 SMART c2h2final6 60 82 IPR013087 -
Gma16g01291 511 SMART c2h2final6 136 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01291 Gma-Chr16 31491889 31496039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01291 1 511 IDZ Gene Family AT5G66730 57.196 1.79e-174 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma16g01291 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01291 K25869 - gmx:100783947 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01291 16 31491889 31496039 Gma16g01291 16 31491889 31496039 ECH
Gma02g00530 02 5263776 5266601 Gma16g01291 16 31491889 31496039 ECH
Gma16g01291 16 31491889 31496039 Gma02g00530 02 5263776 5266601 GST
Gma01g01800 01 53632694 53636387 Gma16g01291 16 31491889 31496039 PCT
Gma16g01291 16 31491889 31496039 Gma01g01800 01 53632694 53636387 PCT