Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01288 ATGTCTTCCCCTCataactctgctccccataattccactcccgataactcctcccctgatgatgccactcccgataattccattcccgataactccacccctgatgatgccactcctgataattccattcccgacaatttcacacctgataattctacgcctgataactccacgcccgataactccaATGGGTCACACAAAAGTTCCTCAATGTCCCCTCCTTCAATGGAGAGACACAATACTCCAACATCGGGAAAAGATTCGCCAAATAAATCATTGAATGCGAAATCATCGGGTTCAAACAATGACAGTGGTGATAAAGCAGCAATGGGAGCTGGGATTGGAGTAGGGTTTGTTCTTCTTGTGCTAGTCATTGTGTGTTTCATTTGGAGGTGCAAGAAGAAAAAACGAAAGCAAAAGTATTATTATCCAGATCCTTCTCAAGGAAAAGCGAGTAACTATTACAACAGTGGGCAACACCCTCTCCCTAGTTGGCAAGCAGGTTCAGGTCCTCATGGGGGTGACCATGTTATGAGGGTACAACAACAACAAggaatgggaatgggaatgggaatggggatgggtatgggaatgggTCCTCATAGTGGTGGCTGGGGTGCACCACCACATCCTATGATGAGCAGTGGTGAAATGAGCTCCAATTACTCATTGGGAATGAGTTCTTCCTCACCAGGCCTTTCTCTTGCACTCAACGCCAATGGTGGCACATTCACTTATGAGGAACTTGCAGCTGCCACCAAAGGTTTTGCCAATGAGAACATCATAGGACAAGGTGGCTTTGGTTATGTCCACAAGGGAATTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTTAAAGCGGGTAGTGGCCAAGGAGAGCGTGAGTTCCAAGCTGAGATTGAAATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGGGGGCAAAGAATGTTGGTCTATGAATTTGTTCCCAATTCGACTTTGGAACATCACCTTCATGGAAAGGGCATGCCTACGATGGATTGGCCTACTAGAATGCGAATTGCACTTGGATCCGCTAAAGGGCTTGCCTACCTTCATGAAGATTGTAACCCTCGCATTATCCACCGTGATATTAAAGCTTCTAATGTCCTTCTTGATCAAAGCTTCGAAGCAAAGGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGACCTGTGGATTTGACAAATGCCATGGATGAAAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGGTTGGAGGATGGCAACTTTAGAGAGTTAGTGGATCCATTTTTGGAAGGCAAATACAATCCCCAAGAAATGACAAGAATGGCAGCCTGCGCTGCTGCAAGCATTCGTCATTCTGCCAAGAAACGTTCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGAAGCCTCATTGGAAGACTTGAAAGATGGAATGAAGCTTAAAGGGAGTGGGAATGGGAATAGCAGTGCTTACCCTTCTTCATATGGGAGCTCAGAATATGATACAATGCAATATAATGCTGATATGATAAAGTTCAGACAGGCAATAATGTCAAGCCAAGAATTTAACGACAGCAGTGAGCTTTCCAGTAAGGAGATGAGTTATCATTAG 1800 0.3872 MSSPHNSAPHNSTPDNSSPDDATPDNSIPDNSTPDDATPDNSIPDNFTPDNSTPDNSTPDNSNGSHKSSSMSPPSMERHNTPTSGKDSPNKSLNAKSSGSNNDSGDKAAMGAGIGVGFVLLVLVIVCFIWRCKKKKRKQKYYYPDPSQGKASNYYNSGQHPLPSWQAGSGPHGGDHVMRVQQQQGMGMGMGMGMGMGMGPHSGGWGAPPHPMMSSGEMSSNYSLGMSSSSPGLSLALNANGGTFTYEELAAATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIALGSAKGLAYLHEDCNPRIIHRDIKASNVLLDQSFEAKVSDFGLAKLTNDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDLTNAMDESLVDWARPLLNKGLEDGNFRELVDPFLEGKYNPQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGEASLEDLKDGMKLKGSGNGNSSAYPSSYGSSEYDTMQYNADMIKFRQAIMSSQEFNDSSELSSKEMSYH 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01288 599 MobiDBLite consensus disorder prediction 1 105 - -
Gma16g01288 599 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 21 598 - -
Gma16g01288 599 SUPERFAMILY Protein kinase-like (PK-like) 234 528 IPR011009 -
Gma16g01288 599 ProSiteProfiles Protein kinase domain profile. 256 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01288 599 Gene3D Transferase(Phosphotransferase) domain 1 332 544 - -
Gma16g01288 599 Pfam Protein tyrosine and serine/threonine kinase 259 525 IPR001245 GO:0004672|GO:0006468
Gma16g01288 599 SMART serkin_6 256 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01288 599 Gene3D Phosphorylase Kinase; domain 1 225 331 - -
Gma16g01288 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Gma16g01288 599 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Gma16g01288 599 PANTHER RECEPTOR-LIKE KINASE 21 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01288 Gma-Chr16 31445106 31449392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01288 100 590 Trihelix Transcription Factor Family AT1G70460 51.509 4.92e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gma16g01288 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01288 - - gmx:100805872 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00523 02 5215022 5219316 Gma16g01288 16 31445106 31449392 ECH
Gma16g01288 16 31445106 31449392 Gma16g01288 16 31445106 31449392 ECH
Gma16g01288 16 31445106 31449392 Gma02g00523 02 5215022 5219316 GST
Gma11g00617 11 5113420 5117002 Gma16g01288 16 31445106 31449392 PCT
Gma16g01288 16 31445106 31449392 Gma11g00617 11 5113420 5117002 PCT