Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01276 ATGATGCATCATTGTTGTGGAAGCTCCCAGGGGCACGTGATGGGCACGTGCACATGCGGCATGTATCACAGCGAAACCAGCGCTTATGGCTCGATGCTGTTTTCCGTGCCCAACAACAGCGAATATGACATGTATTCGTCCTTCACGCCCTCTCCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACACCCTCCACGCGTTTAACCCAAGACGACGACCATGACAACGACAACAAACGACACCCCCACCAACGTCGTTCTGGAGTCGCCAATTTTTGCTGGGACCTGCTCCATTCCAAACACAACAACAACAACACGCAATCTCAAAGCAAGTCTAGTAGCAGAGGAAGCAGCAGCAGCAGCAACAACAACAACAACAACAACGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGCGACACCACTTCCACTCCCTTATGGAGGAACGGTCCTCGTGGTCCTAAGTCACTATGCAATGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCCGCCGCCACGTCGACGGCGGTTCCCGGCGGCGAGATGGAATTGGCGCGCGTGTACGGCCACCACCACAACAATTCGTGGTACGCCGCACACTCGCAGAACCAGAAGATGATGATGATGGGTAACGAGTTACGCTTCATGGACGATTCCGAAGACAGGGACTCGGAGAATAACGGCATTCCCTTTCTCTCTTGGAAACTGAACGTTCCAGATAGAACGAGCCTCGTTGATGAACGATGGTGA 765 0.5438 MMHHCCGSSQGHVMGTCTCGMYHSETSAYGSMLFSVPNNSEYDMYSSFTPSPSSVDCTLSLGTPSTRLTQDDDHDNDNKRHPHQRRSGVANFCWDLLHSKHNNNNTQSQSKSSSRGSSSSSNNNNNNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSTAVPGGEMELARVYGHHHNNSWYAAHSQNQKMMMMGNELRFMDDSEDRDSENNGIPFLSWKLNVPDRTSLVDERW 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01276 254 MobiDBLite consensus disorder prediction 68 84 - -
Gma16g01276 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 251 IPR044272 GO:0003700|GO:0009908
Gma16g01276 254 CDD ZnF_GATA 135 167 IPR000679 GO:0006355|GO:0043565
Gma16g01276 254 Gene3D - 132 211 IPR013088 GO:0006355|GO:0008270
Gma16g01276 254 Pfam GATA zinc finger 136 170 IPR000679 GO:0006355|GO:0043565
Gma16g01276 254 ProSiteProfiles GATA-type zinc finger domain profile. 130 166 IPR000679 GO:0006355|GO:0043565
Gma16g01276 254 ProSitePatterns GATA-type zinc finger domain. 136 161 IPR000679 GO:0006355|GO:0043565
Gma16g01276 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Gma16g01276 254 MobiDBLite consensus disorder prediction 59 85 - -
Gma16g01276 254 MobiDBLite consensus disorder prediction 101 132 - -
Gma16g01276 254 SMART GATA_3 130 183 IPR000679 GO:0006355|GO:0043565
Gma16g01276 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01276 Gma-Chr16 31258999 31260528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01276 8 252 C2C2-Gata Transcription Factor Family AT3G50870 43.299 1.32e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma16g01276 GATA 6.2e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01276 - - gsj:114390318 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01276 16 31258999 31260528 Gma16g01276 16 31258999 31260528 ECH
Gma16g01276 16 31258999 31260528 Gma02g00513 02 5123430 5124512 GST
Gma11g00631 11 5242701 5243587 Gma16g01276 16 31258999 31260528 PCT
Gma16g01276 16 31258999 31260528 Gma01g01655 01 52233720 52242691 PCT