Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01270 ATGGACATGAGAGAGCAAGATAAGGTCATAGAGATGCCTAGCACTTTGGATTATAACAACTCCTCTTCTAGTCCCAAGCTATCATCACCAATAGGTGAAAGATGTGATCAATTACCTCCTCATCAATCTCACACATTAGTTTTCACTGATCCACCACAAACTTCTTCACATCATCATAATCTCTATCCCCCTTCACTCCCACCAAACCCTCTTCAACTTCCACAACCTCATCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATTATTTCTCCTCCAAGAACAACACCACCTCAACCACAACCACACACAACAACAACATTATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGTCATGTCACAGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGCGAGTGCCACCGCAATTTCCACAGAAAAGAACCTCATCAAGGAGTAGTACTAGAGTCACAACTACTACAACATGTTCTCAACAAAAACAGTAGGAACATAAACATTCTTCATTCTCCACACTCTCATCATGTTCTTCATGGGGTTGTTGGTGGGCCAGTTCAGCCCGTGATGTTGGGCTTTGGGGGATCAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCCTTGATCATAGAGGAGGAGGGAACTTGTTATCATCATCAGTGCAGCAGCCACCACTCTCATCATCATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAGAAAGATAGGATGATGGAGTTTGCTGAGAAACTTGGGTGGAAGATCCAGAAGCAAGATGAACAGGAACTGCATCAGTTTTGCTCCCAGGTTGGTGTAAGAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAATTGTAA 954 0.4507 MDMREQDKVIEMPSTLDYNNSSSSPKLSSPIGERCDQLPPHQSHTLVFTDPPQTSSHHHNLYPPSLPPNPLQLPQPHHRPRRDPDPSPIISPPRTTPPQPQPHTTTTLFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPHQGVVLESQLLQHVLNKNSRNINILHSPHSHHVLHGVVGGPVQPVMLGFGGSGPAESSSEDLNMFQTLDHRGGGNLLSSSVQQPPLSSSSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQELHQFCSQVGVRRQVFKVWMHNSKQAMKKKQL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01270 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 58 315 - -
Gma16g01270 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 110 160 IPR006456 -
Gma16g01270 317 Pfam ZF-HD protein dimerisation region 109 161 IPR006456 -
Gma16g01270 317 MobiDBLite consensus disorder prediction 42 62 - -
Gma16g01270 317 MobiDBLite consensus disorder prediction 13 30 - -
Gma16g01270 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 315 - -
Gma16g01270 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 310 IPR006455 -
Gma16g01270 317 MobiDBLite consensus disorder prediction 234 257 - -
Gma16g01270 317 MobiDBLite consensus disorder prediction 1 105 - -
Gma16g01270 317 MobiDBLite consensus disorder prediction 234 259 - -
Gma16g01270 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 111 160 IPR006456 -
Gma16g01270 317 SUPERFAMILY Homeodomain-like 241 314 IPR009057 -
Gma16g01270 317 Gene3D - 239 314 - -
Gma16g01270 317 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01270 Gma-Chr16 31155442 31156395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01270 51 317 ZF-HD Transcription Factor Family AT2G18350 45.387 1.27e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma16g01270 ZF-HD_dimer 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01270 - - gmx:100800005 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01270 16 31155442 31156395 Gma16g01270 16 31155442 31156395 ECH
Gma02g00509 02 5067770 5073331 Gma16g01270 16 31155442 31156395 ECH
Gma16g01270 16 31155442 31156395 Gma02g00509 02 5067770 5073331 GST
Gma01g01778 01 53404740 53405693 Gma16g01270 16 31155442 31156395 PCT
Gma11g00632 11 5258660 5260349 Gma16g01270 16 31155442 31156395 PCT
Gma16g01270 16 31155442 31156395 Gma01g01778 01 53404740 53405693 PCT
Gma16g01270 16 31155442 31156395 Gma11g00632 11 5258660 5260349 PCT