Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01266 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGTGCAGAACTCAGGAAATTAGTTGATAGAATCTTGCGGATAATTCCACAGATAGAAGCAGCACGCCCTAGTGGAATGCAGGCTCTGTGTTTGCTGAACGAGGCAATTGATAAAGCCAAACAACTCCTGTTATACTGCTCCGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATTCCAGAAGGCAAGAAAATCATTAACGCAAAGCTTAGTCCAGATTCTGAATATGGTTCCAGTTATGTTGGCCGCAGAGATTTCTCGACTAATTGGTGATTTTGAGTGTGTGACATTTGTCCTCAACTCTGCTGAACAAGCAGCTGGGAAGGTTATGAAACAATTGCTCCAGCAAGATCCTTCAACATCAGATAAAGATTCAATGGAGGAATCTGAACTAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCCAACGGCCATCTTAATAGAGAGACGATCTATTCAGAAGTTGTTAGAAAAACTCAAACCAAATGACCAGACAAAAGAGATCATCTTGAAAAATCTTTTGTTTCTCCTGATAAAGCACCGAAAATCAATCACAGGGGAACAAATGGAGGTCTACTCTCAAAGTGAAGGACCAATCACAACTCAGAACTCAGATCATGAGTCTCATAAAAACCTTCATGTCAAGTCATACCTGTACTTGAACCATGGTCAGTATAGAACTCATGCCAGTGAGTTGAGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCAAAAACTAAAAAGGAATTGGCTCATATGGCATTGACTCCAAATGTTGCCTTAAAGGACTTGATATTAAACTGGTGCAAAACTAATGGAGTCTCCATTCCTGACCCGCGTAGGCATGTGCAAGATTTTCACTCATGGGAAGCTTCCTCCAACTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAATGGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCACACTAAGGCCAACCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGACAATTCGCGCAGGCATCAATCTCATGTACGGATACATGACGCTGATCGGATGCATTTGTCTAAACTCCATGAGCGTCAATGGGAATCTCAATGCCAAGTCATTGAAAATATGAAAATAGATTTCAAATGCAATTACCAAGCTTTTTGCTCTGTGTCATCTGAGAGTTTCATTGACCCACTCACAAGATTTCTGAGCACTGCATGTGAGAGGCACGATGTAAAAGCTCTGCGAGCAGGAACTAAGTTGCTAATGGAATTTATGAAGTGTTGCAGAAATGGTATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGCGATTGGTGAAGCTCTCACCATAATGGAAGAACTGACAGGGAATTGGTATGAAAAAGCTAACATTGCAGCTTCCAGTGTGCTCACTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCAACGAAAAGCTATTAAAATAATGTATAATTTTTCATCCAATGGTCAAATTTGTCCCTACATGGTGTCTCTCGGGTGCATCCCTAAATTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACAGTATACATATCTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTACTGTTGTAGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCTGCACTGATTATTCTTCTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTGTGTCTGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAACAAAGGAAGTGATATGGCAAAGGCTTATGCATTAGAATTACTCCGTCTTTTGAAGGACGACGAGTTTCAGTATGAAGATTGTTGTGAGCCAAATCTCGGTGCCTCTCAAGAACCTAACAATCACTATCAAGAAAAGAAATCATCAAAGAAACCGTCAATTTTGAAGAAACTATCACTGTTCTCAAAATCCAGTTCAGTTGCACCAAAAACCAAAAGATGA 2277 0.3979 MGTDGSELVETLPNPRSFKVHRTMCAELRKLVDRILRIIPQIEAARPSGMQALCLLNEAIDKAKQLLLYCSESSKLYLAITGDSILSKFQKARKSLTQSLVQILNMVPVMLAAEISRLIGDFECVTFVLNSAEQAAGKVMKQLLQQDPSTSDKDSMEESELKDFQFVAARLGITSPTAILIERRSIQKLLEKLKPNDQTKEIILKNLLFLLIKHRKSITGEQMEVYSQSEGPITTQNSDHESHKNLHVKSYLYLNHGQYRTHASELSRLTPPEEYTCPISLRLMYDPVVIASGKTYERMWIQKWFDEGNTICPKTKKELAHMALTPNVALKDLILNWCKTNGVSIPDPRRHVQDFHSWEASSNSIRSFGSSLYDLNFPMDFSNMSLGSLDTSYNSDSSHTKANHSLNLMLNKSSDNSRRHQSHVRIHDADRMHLSKLHERQWESQCQVIENMKIDFKCNYQAFCSVSSESFIDPLTRFLSTACERHDVKALRAGTKLLMEFMKCCRNGMTNLSEDTCIMLASLLDTEAIGEALTIMEELTGNWYEKANIAASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNGQICPYMVSLGCIPKLLPFFEDRTLLRDSIHILKNLCDTEEGRVTVVETKGCISSVVEILGTGSDEEKEPALIILLSLCSQRVEYCQLVVSEGIIPSLVNISNKGSDMAKAYALELLRLLKDDEFQYEDCCEPNLGASQEPNNHYQEKKSSKKPSILKKLSLFSKSSSVAPKTKR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01266 758 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Gma16g01266 758 MobiDBLite consensus disorder prediction 717 739 - -
Gma16g01266 758 SUPERFAMILY ARM repeat 460 711 IPR016024 -
Gma16g01266 758 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Gma16g01266 758 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Gma16g01266 758 PANTHER U BOX DOMAIN-CONTAINING 2 751 - -
Gma16g01266 758 Gene3D - 605 715 IPR011989 -
Gma16g01266 758 Gene3D - 409 604 IPR011989 -
Gma16g01266 758 CDD RING-Ubox_PUB 277 317 IPR045210 -
Gma16g01266 758 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 751 - -
Gma16g01266 758 SUPERFAMILY RING/U-box 262 348 - -
Gma16g01266 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Gma16g01266 758 Gene3D - 16 107 IPR036537 GO:0007166
Gma16g01266 758 SMART arm_5 583 621 IPR000225 GO:0005515
Gma16g01266 758 SMART arm_5 622 663 IPR000225 GO:0005515
Gma16g01266 758 SMART arm_5 665 705 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01266 Gma-Chr16 31100803 31106363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01266 15 703 U-box Gene Family AT4G36550 38.976 3.40e-140 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01266 - - gmx:100798951 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01266 16 31100803 31106363 Gma16g01266 16 31100803 31106363 ECH
Gma02g00504 02 5035327 5039402 Gma16g01266 16 31100803 31106363 ECH
Gma16g01266 16 31100803 31106363 Gma02g00504 02 5035327 5039402 GST
Gma01g01774 01 53362807 53368517 Gma16g01266 16 31100803 31106363 PCT
Gma11g00636 11 5294757 5300231 Gma16g01266 16 31100803 31106363 PCT
Gma16g01266 16 31100803 31106363 Gma01g01774 01 53362807 53368517 PCT
Gma16g01266 16 31100803 31106363 Gma11g00636 11 5294757 5300231 PCT