Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01264 ATGTCGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATTGGCAGCACATCAAAGCGGGGTGCAGAAAGCAAGCATTGGCTCAGTCGGACAAAGTCACATGTAGCACCAGATATTCTTGCTACTCCATTTGAACCTATTCAACAGGGACAATGGGCAAATCTACCATCAGAATTGCTTCTGGACATAATCCAGAGGATCGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTTGTTGTCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAGAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCCATTTCATTGAAGCAGCCGGGTCCGCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCATCAGAGAATGACGGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACGGACACTGACTTTATCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGGCAAGTGTCTAATTTTTTAGGTACCAAGTTCACCATATTTGACAGTCAAGCTCCAAATGATGTTGCAATTCAACCAAATTGTCAATCTAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGACTTCCAGCTTGTAATTATCTTGTTAGCACTGTTTCCTACGAGCTGAATGTCCTATGCACTAGAGGGCCAAGAAGAATGTACTGTGTCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGCGGCAATGCCCCAACTCCAGCATCTTACCCTCAAATATTTGATGAACATTTTTCTCCATCACCAGCACTGAAAGAAAAAGTTCCAGTCACAGATTTAAACTCTGCAAGCTTATCAGAGCCACCAGTATCGAGCCAATGCTCAGCCGAGCAATTAGCACTGAAAAACAGGGCTCCCAGATGGCATGAGCAGCTTCAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTTCAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGTTGTTGATCCATCTCATAATATTTCTGCTGAGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACTGTTATCCGCTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGACACTAAACCTGCCTGTGAATGA 1251 0.4317 MSLRSIVRELKEMRDGIGSTSKRGAESKHWLSRTKSHVAPDILATPFEPIQQGQWANLPSELLLDIIQRIEESETSWPARAVVVFCASVCKSWRSITREIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDGNKLLLAAKRIRRATDTDFIISLAADDFSRASNKYVGKLRQVSNFLGTKFTIFDSQAPNDVAIQPNCQSSRRFHSKQVSPRLPACNYLVSTVSYELNVLCTRGPRRMYCVMNSIPVSAIQEGGNAPTPASYPQIFDEHFSPSPALKEKVPVTDLNSASLSEPPVSSQCSAEQLALKNRAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAVVDPSHNISAEEQEKVILQFGKIGKDIFTMDYCYPLSTFQAFAICLSSFDTKPACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01264 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Gma16g01264 416 Pfam Tub family 116 411 IPR000007 -
Gma16g01264 416 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 416 - -
Gma16g01264 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Gma16g01264 416 SUPERFAMILY Tubby C-terminal domain-like 104 416 IPR025659 -
Gma16g01264 416 Gene3D Tubby Protein; Chain A 114 416 IPR025659 -
Gma16g01264 416 PANTHER TUBBY-RELATED 1 416 - -
Gma16g01264 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Gma16g01264 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Gma16g01264 416 Pfam F-box domain 55 102 IPR001810 GO:0005515
Gma16g01264 416 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Gma16g01264 416 Gene3D - 48 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01264 Gma-Chr16 31089966 31091907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01264 1 416 TUB Transcription Factor Family AT2G18280 61.905 2.89e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma16g01264 Tub 3.1e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01264 K19600 - gmx:100777506 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01264 16 31089966 31091907 Gma16g01264 16 31089966 31091907 ECH
Gma02g00502 02 5027171 5030680 Gma16g01264 16 31089966 31091907 ECH
Gma16g01264 16 31089966 31091907 Gma02g00502 02 5027171 5030680 GST
Gma01g01773 01 53356803 53359996 Gma16g01264 16 31089966 31091907 PCT
Gma11g00637 11 5301339 5303063 Gma16g01264 16 31089966 31091907 PCT
Gma16g01264 16 31089966 31091907 Gma01g01773 01 53356803 53359996 PCT
Gma16g01264 16 31089966 31091907 Gma11g00637 11 5301339 5303063 PCT