Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01248 ATGTTTTCCTCTAGAGGCAACATGGCTATGGCTTCACCCTCCTCAATCTTCTCTGTTTATGCTTCCATGACAGCCTCCATCATGCTCCTGCGTTCAGTAACCAACGACCTCATTCCTCAACCATTTCGTGGCTACCTCACCAACGCCTTCCGCTACTTCTTCAAGGCTCGCTGCAAAGTCCTCACCCTCACCATTGAAGAGTACTGCAGCGGCATAGCTCGCAACCATGTCTATGACGCTGCAGAGGTTTACTTGTCTACCAAAATCACCCCTGAAAATGAGAGACTCAACATCAGCAAGAGTCCAAAGGAGAAAAAACTCACCATTAGGCTTGAAAAGGGTGAAGAGCTAGTTGATTGGTTTAATGGGATTAAGCTCAATTGGAAACTAATCTGCTCAGAGTCTGAGAAGAGCAATAGTTCCAATGATCACAGCAGAAACAACCCAACAAGAACAGAAAAGAAGTACTTTGAGCTAAGCTTTGAGAAGAAGCACAAGGAGATGGTGTTAGGAAGTTACTTGCCTTTCATTCTTGAGAAAGACAAGGAGATGAAGGATGAGGAGAGGGTGTTGAAGATGCACACTCTCAATACTTCATACGGTTATGGAGGGTTCAAGTGGGATTCAATTAATTTAGACCACCCTTCAACGTTTGAGACACTGGCTTTGGAGGCAGAGCAGAAGAGTGCCATCATGGAGGATTTGAACAGGTTTGTGAGGAGGAGGGAGTATTATAGGAAAGTTGGGAGGGCTTGGAAACGCGGGTACTTGTTGTACGGCCCTCCGGGGACCGGCAAATCGAGCTTGATCGCGGCCATGGCTAACTACTTGAAGTTTGATATCTATGATCTTCAGCTTGACAACTTAGTGACCGATTCTGATCTCAGAAAGTTGTTGCTGGCAACTGCAAACAGGTCTATTCTGGTCATTGAAGACATCGATTGCAGCGTCGATCTGCCAGGGCGTAGGCATGGAGATGGCCGTAAACAACCTGATGTGCAGTTGAGTTTGTGTGGATTACTCAACTTCATAGATGGGCTATGGTCGAGTTGTGGAGACGAGAGAATCATCATACTCACCACCAACCACAAGGAAAGGCTAGACCCGGCACTGTTGCGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCACGGCTTCAAGGTTTTGGCCTCCAACTACCTAGACATTGCCCCGGATCACCGCCTTGTCGGGGAGATTGAAGGGCTGATAGAGGACATGCAGATAACCCCAGCACAGGTGGCAGAGGAACTGATGAAGAGCGAAGATGCTGACACGGCACTAGAAGGGTTCCTAAAGCTGCTCAAGAGGAAGAAGATGGAAGGAGACGTGTGTGAGAATGATGGTTCAGATAAAACAGAACTTCACCAATCTAAAAGGTCCAAAGTTGGTTGCAAGCAGAAAAGACCAGTTTGTATCAGCAAGAGAAAAAATGGTGTGGGGACTCAAAGAAGGACAAGAGGACGTCCTTTGTAA 1509 0.4705 MFSSRGNMAMASPSSIFSVYASMTASIMLLRSVTNDLIPQPFRGYLTNAFRYFFKARCKVLTLTIEEYCSGIARNHVYDAAEVYLSTKITPENERLNISKSPKEKKLTIRLEKGEELVDWFNGIKLNWKLICSESEKSNSSNDHSRNNPTRTEKKYFELSFEKKHKEMVLGSYLPFILEKDKEMKDEERVLKMHTLNTSYGYGGFKWDSINLDHPSTFETLALEAEQKSAIMEDLNRFVRRREYYRKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLDNLVTDSDLRKLLLATANRSILVIEDIDCSVDLPGRRHGDGRKQPDVQLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKVLASNYLDIAPDHRLVGEIEGLIEDMQITPAQVAEELMKSEDADTALEGFLKLLKRKKMEGDVCENDGSDKTELHQSKRSKVGCKQKRPVCISKRKNGVGTQRRTRGRPL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01248 502 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Gma16g01248 502 PANTHER BNAA10G17020D PROTEIN 9 463 - -
Gma16g01248 502 Pfam Domain associated at C-terminal with AAA 38 131 IPR025753 -
Gma16g01248 502 CDD AAA 240 385 - -
Gma16g01248 502 Pfam ATPase family associated with various cellular activities (AAA) 257 384 IPR003959 GO:0005524|GO:0016887
Gma16g01248 502 PANTHER BCS1 AAA-TYPE ATPASE 9 463 - -
Gma16g01248 502 SMART AAA_5 252 387 IPR003593 -
Gma16g01248 502 MobiDBLite consensus disorder prediction 454 472 - -
Gma16g01248 502 Gene3D - 382 453 - -
Gma16g01248 502 Gene3D - 206 381 IPR027417 -
Gma16g01248 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 435 IPR027417 -
Gma16g01248 502 MobiDBLite consensus disorder prediction 454 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01248 Gma-Chr16 30580738 30583417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01248 245 429 Miscellaneous Gene Families AT3G02450 31.633 6.04e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01248 - - gmx:100812263 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01248 16 30580738 30583417 Gma16g01248 16 30580738 30583417 ECH
Gma16g01248 16 30580738 30583417 Gma02g00486 02 4910795 4913112 GST