Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01245 ATGGAGTTTGCCAGTTTCCATCTTCAGCAGCATCAGCTCCAAGAAGAATCTGCTCAGTTTAGTATAATTTCAACAACCCCACCACCTGACTCTAAACCTTCCACTACTATCACTAATCAATCATGGATCCCAAGCAACATGTACAATGGTTATAACAGTGGGTTTCTAACTGATCAGAGCTTCACAAATTCAAGAGAACTACAACACAAGCACGCCATGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTAACAATGGAAAAAGCCTCATAACTCAGCATCCAGTTGGTGATAATAATAGTCTCTTTCCTGCAAGAATATTCAAAGGTGAAATGATCGACAACACCTTCATGAAGGCTATGGAGGAATCATCACTAGTTCCAATTCATCATGAACCACGATATTCTTCTCCTAGTTTCTTATCTAGTATTGGTGTAACTGTTGGTGAAGAGTTTTATCCTAATGACAAGCCTATAGATGGAGGGACCCCAAGCAAGAGATATAATAATAGCTTTGGCGATGTTGCCTTAATTTCAAATTTACCAACCCTAGATATGGCCTCTTCCTTAGTTTCATGTTCTTTGGGATTAAACCCTAAAATGTTTGATCTGCATACAAGTTATGGTGGGAGTTGTGGAATCCAACCTGGCTATGATACTTTTGGTATTAACGAGAGCATATCTTTGAGTCACAGCTATGAGCATGGCCGTGAAAACAGTCCATCAAACAGCACAAGTAAAATTTCATCATTTGTAAGTGAAGTTGCAACGACGAAAAGGCCAAGCAATTGCTCTCCACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCATGCCCGCCCCTGAAGGTAAGAAAGGAGAAATTAGGGGATAGGATCCAAACTCTTCAGAGACTAGTGGCACCTTTCGGAAAGACCAGCACCGCCTCTGTCTTGAGTGAAGCAATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCGCGCAAAGCAAGCCCTCTAGAGTGGTGCAGCTGGATTCAAATAAGGTAGATAGAAGAGAATTCAAGCCCGACCTTAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTACGCATCATTCATTCATCGTTGTGTTTAG 1161 0.4143 MEFASFHLQQHQLQEESAQFSIISTTPPPDSKPSTTITNQSWIPSNMYNGYNSGFLTDQSFTNSRELQHKHAMTDSLRISTRQAFGFNNGKSLITQHPVGDNNSLFPARIFKGEMIDNTFMKAMEESSLVPIHHEPRYSSPSFLSSIGVTVGEEFYPNDKPIDGGTPSKRYNNSFGDVALISNLPTLDMASSLVSCSLGLNPKMFDLHTSYGGSCGIQPGYDTFGINESISLSHSYEHGRENSPSNSTSKISSFVSEVATTKRPSNCSPPKESEAKAKKSRPSCPPLKVRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSAQSKPSRVVQLDSNKVDRREFKPDLRSRGLCLVPLSYASFIHRCV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01245 386 MobiDBLite consensus disorder prediction 235 288 - -
Gma16g01245 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Gma16g01245 386 Gene3D - 288 347 IPR036638 GO:0046983
Gma16g01245 386 MobiDBLite consensus disorder prediction 235 268 - -
Gma16g01245 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 339 IPR036638 GO:0046983
Gma16g01245 386 MobiDBLite consensus disorder prediction 272 288 - -
Gma16g01245 386 CDD bHLH_AtbHLH_like 288 335 IPR045239 -
Gma16g01245 386 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 382 - -
Gma16g01245 386 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01245 Gma-Chr16 30545710 30549903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01245 245 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 53.103 1.38e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01245 - - gmx:100785177 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01245 16 30545710 30549903 Gma16g01245 16 30545710 30549903 ECH
Gma02g00482 02 4886776 4890124 Gma16g01245 16 30545710 30549903 ECH
Gma16g01245 16 30545710 30549903 Gma02g00482 02 4886776 4890124 GST