Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01242 ATGACCATGATGGATTTAAACATTGCCCAACAAATTGGTGGGAGTTCTTGGAGATTCTTGGGAATAGAAACACCCTTACCTTGTTGCCTCCACGAGTATGACACCAGTGTTGTTGCTGTGAAGGCTTCAAAGAAATCATCAAGAATATGCAAATACTGGATAGATGGCAACTGTGCATACGGTGATCAGTGCTGGAATAGACATTCGTTTGTTAATGTTATCAAGAAAGATAGTCCAAGACCCAAAAGGTTGGTTTGGTGGACAGCACCTCCTATAATGTTTGTGAAGATAAATTGCGATGGGGCTTTTACCCGCTGTGGAAATAAAGCTGCTGCCGGAGGGATTGTGAGGGATTGGAAAGCGAATTTTGTCTATGCTTTCTCTAGTAGATTGGGTAAGTGCTGCACGGCGCTAGAGGCTGAGTTATGGGCAATTAAGATTGGAGTAGAAACCGCAGTATCCAGGGTATACGGTAATTTGATTGTGGAGAGTGATTCGTATGCAAGTATCCAACTCATTAACATGGGAGTTCCACAAGGTCACATTTTTTATGATCTTGTCTCTTCCATACTTGAGATTGGTAACAAGGCCAATCATATAGTTTGGAATCATGTCTTCAGAGAAACTAATTCGACAGCTGATGGTCTCGCCAAACATGGATTGTCATTGTCTAGTGGGGTAGAACTTTTTGAGTTTCCTCCACCGTTCATTTGGGCCCCTTTGTGTGCAGATGAAATGGGAGTAATATACTCTCGGTGA 759 0.4256 MTMMDLNIAQQIGGSSWRFLGIETPLPCCLHEYDTSVVAVKASKKSSRICKYWIDGNCAYGDQCWNRHSFVNVIKKDSPRPKRLVWWTAPPIMFVKINCDGAFTRCGNKAAAGGIVRDWKANFVYAFSSRLGKCCTALEAELWAIKIGVETAVSRVYGNLIVESDSYASIQLINMGVPQGHIFYDLVSSILEIGNKANHIVWNHVFRETNSTADGLAKHGLSLSSGVELFEFPPPFIWAPLCADEMGVIYSR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01242 252 Gene3D - 94 222 IPR036397 GO:0003676
Gma16g01242 252 CDD RNase_H_like 97 218 IPR044730 -
Gma16g01242 252 Pfam Reverse transcriptase-like 98 219 IPR002156 GO:0003676|GO:0004523
Gma16g01242 252 SUPERFAMILY Ribonuclease H-like 95 223 IPR012337 -
Gma16g01242 252 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Gma16g01242 252 SMART c3hfinal6 46 70 IPR000571 GO:0046872
Gma16g01242 252 PANTHER OS05G0353850 PROTEIN 79 244 - -
Gma16g01242 252 SUPERFAMILY CCCH zinc finger 44 69 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01242 87 222 Glycoside Hydrolase AT2G33160 28.467 7.06e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma16g01242 RVT_3 7.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01242 - - pvu:PHAVU_006G058500g 214.542