Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01228 ATGAAAATCCATCCCTCTTTATCCTTGCTCTGGGCGGAGGAGGAAGTTGCGGACTTGGAATGGTTGTCTCATTTCGTCGAAGATTCTAATTTCTCAGAATACTCTCTTCCCTTCCCTGCAACCTTAGCGGAGAAAGTGAAATCACCGGAACCGGGAAACACCGGTTTCACTTACAAGACCTCGGTTCCGACGAAGACGAGGAGCAAGCCAACGCGAACCAGTGTCCGGGTTTGGCCGCTCACGTCATCAACAGTAACAACAACAACCCCGACAACTTCATCCCCGTCCTCATCTTCGCCCTCGAGTCCGTTGCTTGCGTACGCAGCAGCGGACCCGAGGGTGAAGAAACACGTTGTTATTGACAGCGCCGTGGCGGCGCGACGGTGCAATCACTGCGGAGTACAGAAAACACCACAGTGGCGCATCGGGCCACTCGGGGCGAAGACCCTGTGCAACGCGTGTGGGGTCCGCTTCAAGTCGGGTCGGTTATTACCTGAATACAGACCCGCCTGTAGCCCTACTTTCTCCATCAAGTTGCACTCCAACCACCACCGGAAGGTCCTCGAGATGCGGCGGAAGAAGGAGGTCACGCCGGAACCCGACACCTCTTCGCCACGGTCGATTCCCAATTTTTGA 636 0.555 MKIHPSLSLLWAEEEVADLEWLSHFVEDSNFSEYSLPFPATLAEKVKSPEPGNTGFTYKTSVPTKTRSKPTRTSVRVWPLTSSTVTTTTPTTSSPSSSSPSSPLLAYAAADPRVKKHVVIDSAVAARRCNHCGVQKTPQWRIGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSIKLHSNHHRKVLEMRRKKEVTPEPDTSSPRSIPNF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01228 211 Gene3D - 121 197 IPR013088 GO:0006355|GO:0008270
Gma16g01228 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 185 - -
Gma16g01228 211 MobiDBLite consensus disorder prediction 49 104 - -
Gma16g01228 211 PIRSF Txn_fac_GATA_plant 3 209 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma16g01228 211 MobiDBLite consensus disorder prediction 189 211 - -
Gma16g01228 211 MobiDBLite consensus disorder prediction 53 104 - -
Gma16g01228 211 CDD ZnF_GATA 128 176 IPR000679 GO:0006355|GO:0043565
Gma16g01228 211 PANTHER GATA TRANSCRIPTION FACTOR 9 197 - -
Gma16g01228 211 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Gma16g01228 211 SMART GATA_3 123 177 IPR000679 GO:0006355|GO:0043565
Gma16g01228 211 PANTHER GATA TRANSCRIPTION FACTOR 9 197 - -
Gma16g01228 211 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01228 Gma-Chr16 30180886 30184160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01228 5 211 C2C2-Gata Transcription Factor Family AT5G66320 48.760 4.71e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma16g01228 GATA 2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01228 - - gmx:100778222 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00466 02 4670513 4672102 Gma16g01228 16 30180886 30184160 ECH
Gma16g01228 16 30180886 30184160 Gma16g01228 16 30180886 30184160 ECH
Gma16g01228 16 30180886 30184160 Gma02g00466 02 4670513 4672102 GST