Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01217 ATGATGGAGTCATGTATCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTGGGTTACTATCTGAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTATATCGTATTGAACCATGGGATCTCCAAGAGACATACAGGATTGGGTACGAGGAGCAGAACGAGTGGTATTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCATGGCAGGATTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGGAGGAAGGATGGGTGGTGTGCAGAGCATTCAAGAAAAGAACAACTAACGGCCAAACGAAGACTATTGAAGGATGGCATCGAAACTGCTTATACGATGAACAACAACAAGCATGTGGTAGTGTCAGCAGCACTGTGGTGGACCCTAATATTGACCTTATGTTAAGGCAACAACCTCAGAGGTTTTCAGGAGCTCAAAATTTCATGTACAAGCAAGAAGAGATCATAGAAGCAGATAATAATAATTTGAGCTTCATGCATGCAGAACAACAATTGGTGCAGCTTCCTCATCTAGAAAGTCCTTCTTTGCCACTAGCAAAGAAACAAAGCTCAGTAGTGTCCCCAATATCAGACAATATTAATAACAACGAAGATGATGATAATCCTCAAAAGGGTTTATCCAACACTACAAAGAAAGTGACCACTGATTGGAGAGCTCTTGACAAGTTCGTGGCTTCTCAGTTGAGCCAAGAAGAGAGGCATGAAATAGAAGGGGTGTCAAGCTTTGCAACTCATCACACTACTACTAGCTCGGACATGGCATTGCTGCTACTGCAGAATAATAGTAGGGAAAATGAAAGGAACAACAAGTTCAACCCGTTTTTCAATACAAGCTCAACAATATCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 1089 0.4252 MMESCIPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQETYRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFKKRTTNGQTKTIEGWHRNCLYDEQQQACGSVSSTVVDPNIDLMLRQQPQRFSGAQNFMYKQEEIIEADNNNLSFMHAEQQLVQLPHLESPSLPLAKKQSSVVSPISDNINNNEDDDNPQKGLSNTTKKVTTDWRALDKFVASQLSQEERHEIEGVSSFATHHTTTSSDMALLLLQNNSRENERNNKFNPFFNTSSTISDCDIGICVFEK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01217 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 336 - -
Gma16g01217 362 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Gma16g01217 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 336 - -
Gma16g01217 362 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Gma16g01217 362 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Gma16g01217 362 MobiDBLite consensus disorder prediction 258 280 - -
Gma16g01217 362 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01217 Gma-Chr16 29900547 29904038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01217 2 361 NAC Transcription Factor Family AT2G18060 59.318 1.72e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma16g01217 NAM 8.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01217 - - gmx:100803726 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01217 16 29900547 29904038 Gma16g01217 16 29900547 29904038 ECH
Gma16g01217 16 29900547 29904038 Gma02g00456 02 4583994 4587136 GST
Gma11g00685 11 5740021 5742465 Gma16g01217 16 29900547 29904038 PCT
Gma16g01217 16 29900547 29904038 Gma11g00685 11 5740021 5742465 PCT