Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01215 ATGAGAACTCGAAATGCCGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGCCGCCGCCGAGGAAATCCCCTGCGGCAAAGCGCACCACCGCCACCAAAACCAGAGCCACAAAGAAGAACGAGGTTTCGCCCGCACCCGATTCCAACCCCTATCAATCTCCTCTGGAGCAGGAATCGTTAGGCAGTGCTAGCAGTGCAAAATTTGTGAAAAAGAAGACTCCGGGGAGACCGAGAAGTAAAGCAATTGATACTCCAAATTCGGAAGAGCAATGTGAGGCAGTAACTGATGAAACTCTGATTGAAGATGATACTGAGGTGGTAGAGAAAGTGGAAGATGTTGGAGTGGTTGGTGCAGGTAGTGTTGAGGGTGAGAAGGAGGGGGGACAAGGTGTTGGGTCTGTTGGATTATCTGACGAGACGGAAGGTAAGTCGATGGAAGTGAATGAACCTGTTGTTGAAAAGGTTTGCGAATTGGTGGAAAAGGGAAATGATGTAATGGAAGTTGAAGTAGCTGCTTCCCAGGATGCTTCTGTTTCTTTCAAGCGACTGGGGCGACCCATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGggagaaaaaggaaaggaagagttgaaagatcaagagggggaccaagggaaggaagagttgaaagaacaggaaggagagaaagggaaggaagagttgagagaactggatgcagagaaagggaaggaagagttgagagaactggatgcagagaaagcaaaggaagagttgaaagaactggatggagagaaaggtaaggaagaattgaaagaactggatggagagaaaggtaaggaagaattgaaagaactggatggagagaaaggtaaggaagagttgacagaactggaaggacagaaaggtaaggaagagttaacagaactggaagggcagaaaggtaagggagagttgacagaactggagggacagaaaggaaaggttgagttgaaagaacaggaaggagacaaaggaaaggaaaagttgaaagTGCAGGAGCTGGAGAAAGCAAAGGGAGAGGAAACATACCTTTCTGGACATAAAGAGAACACCAAGTCTTTTGGTGTAGAAGTTAAAGCCCAGATGCAAAAAGAAGATGCTAATCCCATTAAAGATGATGGTGAAGGACTACAGAGTTGTGAAAAGTACGATCTTGGAGAACAAGGGAAGGTGGAACTTGTTGAAGAGGATCCTGAGGAACCTCCAGAAGAAACTTTGGCATTGGAGGAGGAACATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAAGAACATGAAATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAGGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTCGTGAAGTTTGCTAATAAGGAGAATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTCATACATGGTAAGCGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAAAAGCTGAAGGATTATGGCATTGAAGGTGTTGAAAGCATTACACTTGTTCCAGATGTTCAGCATGAGGGCTTGAGCCGGGGCTTTGCATTCCTAGAGTTTTCTTGTCATGCTGACGCCATGCTTGCATTTAAGAGGCTACAAAAGCCTGATGTTATCTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACATGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAGGATCATGTGAGGGAGCTGTTTAAAGCATATGGTGAAATTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCGCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGAGTGGTGGGTTCCGAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGAGTTTCTATCGCGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCATGATTTTAGTATGCATCCGGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCGGGACCATCTAGACCTTATCATGATAGAGCATGGTACGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATACGATGACAATATGCAAGGAATGAAACGGCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTACTAGACTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCCTGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCGCCGGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTCATCTTATTACGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAA 2826 0.3871 MRTRNADSASKSATPKKTPPPPPRKSPAAKRTTATKTRATKKNEVSPAPDSNPYQSPLEQESLGSASSAKFVKKKTPGRPRSKAIDTPNSEEQCEAVTDETLIEDDTEVVEKVEDVGVVGAGSVEGEKEGGQGVGSVGLSDETEGKSMEVNEPVVEKVCELVEKGNDVMEVEVAASQDASVSFKRLGRPIVDLNISADNEDCTGEKEGEKGKEELKDQEGDQGKEELKEQEGEKGKEELRELDAEKGKEELRELDAEKAKEELKELDGEKGKEELKELDGEKGKEELKELDGEKGKEELTELEGQKGKEELTELEGQKGKGELTELEGQKGKVELKEQEGDKGKEKLKVQELEKAKGEETYLSGHKENTKSFGVEVKAQMQKEDANPIKDDGEGLQSCEKYDLGEQGKVELVEEDPEEPPEETLALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMSGGFRISHARSGAFSRPGRGFGRGRQPFNNRGNFNRGRSFYRGGHSQIGRMGFRDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMQGMKRPFYMTDPEPDYMGPTRLRPRLDYADPPIFPGTHHHDSFGAGSRQYPPDYYGSDYGRGSYSSYYGGDGSHGHGYYY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01215 941 MobiDBLite consensus disorder prediction 732 758 - -
Gma16g01215 941 MobiDBLite consensus disorder prediction 97 111 - -
Gma16g01215 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 624 704 IPR000504 GO:0003723
Gma16g01215 941 Coils Coil 335 355 - -
Gma16g01215 941 MobiDBLite consensus disorder prediction 199 349 - -
Gma16g01215 941 Gene3D - 612 767 IPR012677 -
Gma16g01215 941 MobiDBLite consensus disorder prediction 190 349 - -
Gma16g01215 941 Gene3D - 525 610 IPR012677 -
Gma16g01215 941 CDD RRM_SF 626 700 - -
Gma16g01215 941 MobiDBLite consensus disorder prediction 1 151 - -
Gma16g01215 941 Gene3D - 395 520 IPR012677 -
Gma16g01215 941 CDD RRM_SF 448 516 - -
Gma16g01215 941 CDD RRM_SF 528 591 - -
Gma16g01215 941 PANTHER NUCLEOLIN-LIKE ISOFORM X1 333 934 - -
Gma16g01215 941 SUPERFAMILY RNA-binding domain, RBD 615 729 IPR035979 GO:0003676
Gma16g01215 941 SMART rrm1_1 625 700 IPR000504 GO:0003723
Gma16g01215 941 SMART rrm1_1 447 520 IPR000504 GO:0003723
Gma16g01215 941 SMART rrm1_1 527 604 IPR000504 GO:0003723
Gma16g01215 941 SUPERFAMILY RNA-binding domain, RBD 447 591 IPR035979 GO:0003676
Gma16g01215 941 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 333 934 - -
Gma16g01215 941 MobiDBLite consensus disorder prediction 30 69 - -
Gma16g01215 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 516 IPR000504 GO:0003723
Gma16g01215 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 626 692 IPR000504 GO:0003723
Gma16g01215 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 596 IPR000504 GO:0003723
Gma16g01215 941 Coils Coil 244 276 - -
Gma16g01215 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 524 IPR000504 GO:0003723
Gma16g01215 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 611 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01215 Gma-Chr16 29868627 29875976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01215 448 692 Eukaryotic Initiation Factors Gene Family AT1G22760 25.581 5.35e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01215 - - gmx:100819035 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01215 16 29868627 29875976 Gma16g01215 16 29868627 29875976 ECH
Gma16g01215 16 29868627 29875976 Gma02g00454 02 4567902 4574462 GST