Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01212 ATGGGACGTGTGATCCGTGCGCAGCGTAAGGGAGCAGGCTCGGTCTTCAAGTCCCACACGCACCACCGCAAGGGCCCTGCACGCTTCCGGAGCCTGGACTTCGGGGAGCGCAACGGCTACCTCAAGGGCGTGGTCACCGACGTCATCCATGACCCTGGCCGCGGCGCGCCGCTCGCCAAGGTCGCCTTCCGCCACCCTTTCAGATACAAGAAGCAGAACGAGCTCTTCATTGCCGCCGAGGGCCTCTACACCGGTCAGTTCATCTACTGCGGCAAGAAGGCCACCCTTGTTGTCGGGAACGTTCTACCCCTGAGGTCCATCCCCGAAGGAGCCGTCATCTGCAACGTCGAGCATCACGTCGGCGACCGCGGCGTCTTTGCCCGGGCGTCTGGCGACTACGCCATTGTTATCAGTCACAACCCTGATAATGACACCTCTAGGATTAAACTCCCATCTGGTTCAAAAAAGATTGTTCCTAGTGACTGTAGGGCCATGATTGGGCAAGTTGCAGGTGGAGGGAGAACTGAGAAGCCTCTTCTCAAGGCTGGAAATGCTTACCACAAGTTTAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTTGCTATGAACCCTGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCATATCGGTCATGCTAGTACTGTCAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCCGCAAGGAGGACTGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAGGCTGATAAGGCTTAA 783 0.5734 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVAFRHPFRYKKQNELFIAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01212 260 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 Gene3D - 1 86 IPR012340 -
Gma16g01212 260 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Gma16g01212 260 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Gma16g01212 260 PANTHER RIBOSOMAL PROTEIN L2 1 260 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 PANTHER 60S RIBOSOMAL PROTEIN L8 1 260 - -
Gma16g01212 260 MobiDBLite consensus disorder prediction 210 230 - -
Gma16g01212 260 Gene3D - 90 169 IPR014722 -
Gma16g01212 260 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Gma16g01212 260 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gma16g01212 260 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Gma16g01212 260 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01212 Gma-Chr16 29833892 29835401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01212 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.798 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01212 K02938 - gmx:547677 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01212 16 29833892 29835401 Gma16g01212 16 29833892 29835401 ECH
Gma16g01212 16 29833892 29835401 Gma02g00450 02 4532087 4533984 GST
Gma11g00691 11 5778410 5780033 Gma16g01212 16 29833892 29835401 PCT
Gma16g01212 16 29833892 29835401 Gma11g00691 11 5778410 5780033 PCT