Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01199 ATGGGAACCTGCTTTTCCGCCACCAAAGTCAGCGGCTCCCACGGCAACGCCGTCACCGTCAACAAGAACCGCAAGGGGGCCGCGAAGCCGAAATCAGAGACGGCAACGGCGAATCCCCTACGGCACAAGGCAAGTTCGCGCCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACGAGAAGGATTTCGATCAGCGTTACTCGCTCGGAAAATTGCTCGGGCACGGCCAATTTGGTTACACTTACGTTGGAATCGACAAAGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTTGAGAAGAGTAAGATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACTGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAAGATGGTTCTTATGTGTACATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGTAAGTCTGGTCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGTTGTGCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGATGAGACAGGCTCTTGCCAAAGATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTACCAGAAGGTTCTAGATTAGAGATTGACAATCTATGA 1536 0.444 MGTCFSATKVSGSHGNAVTVNKNRKGAAKPKSETATANPLRHKASSRHVPCGKRTDFGYEKDFDQRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKALTGHENVVQFYNAFEDGSYVYIVMELCEGGELLDRILAKKDSRYTERDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRFKQFALRALASTLNEEELADIKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDNNTDGLVDFREFVAATLHVHQLEEDSDKWQQLSQAAFEKFDLDKDGYITPEELRMHTCLRGSVDPLLEEADIDKDGKISLPEGSRLEIDNL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01199 511 Gene3D - 347 502 - -
Gma16g01199 511 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Gma16g01199 511 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Gma16g01199 511 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Gma16g01199 511 SMART efh_1 452 478 IPR002048 GO:0005509
Gma16g01199 511 SMART efh_1 374 402 IPR002048 GO:0005509
Gma16g01199 511 SMART efh_1 411 439 IPR002048 GO:0005509
Gma16g01199 511 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Gma16g01199 511 MobiDBLite consensus disorder prediction 24 47 - -
Gma16g01199 511 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Gma16g01199 511 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 22 502 - -
Gma16g01199 511 CDD EFh 374 435 IPR002048 GO:0005509
Gma16g01199 511 Gene3D Transferase(Phosphotransferase) domain 1 153 346 - -
Gma16g01199 511 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Gma16g01199 511 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 502 - -
Gma16g01199 511 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01199 511 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01199 511 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Gma16g01199 511 SUPERFAMILY EF-hand 357 502 IPR011992 -
Gma16g01199 511 CDD STKc_CAMK 66 326 - -
Gma16g01199 511 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Gma16g01199 511 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01199 511 SUPERFAMILY Protein kinase-like (PK-like) 65 342 IPR011009 -
Gma16g01199 511 Gene3D - 368 437 - -
Gma16g01199 511 Pfam EF-hand domain pair 455 502 IPR002048 GO:0005509
Gma16g01199 511 Pfam EF-hand domain pair 374 436 IPR002048 GO:0005509
Gma16g01199 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01199 Gma-Chr16 29613804 29618182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01199 1 506 EF-hand Containing Proteins AT2G17890 74.681 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma16g01199 Pkinase 7.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01199 K13412 - gmx:100798941 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01199 16 29613804 29618182 Gma16g01199 16 29613804 29618182 ECH