Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01190 ATGCTTGCAACATCTTTTTCCATTGTCACTCTCACCACTACCAATTTCTCTGTTGAAAGCATTTCCTCGTTGTCGCACCACGTCAAACTCCAATCTACAGTATCCTTCGCCACTGCCAGATGGACGGAGAAGCAACAACAACAACAACACAGGCATGTTTCGGATCTGAGCCTTCACCATATGGCTTCATGCACGACGTTGTATGAGATTTTGGGAATTCGTGTCACTGCGTCCGACGAGGAAATAAAGGCGGCATATCGACGACTGGCGAGGGTCTACCACCCTGACGTGGCACCAGCGGAGCGAAAGGAATCCTTTACGGGTGAGTTCATGAAGATACACACTGCGTACCGTACACTGTCAGATCCTGAGAAGCGTGCCAACTATGATAGAAGCTTGATCCGACGCCACCAGAAACCGCTCACAATGTCATCATCATCGTTGTGGGGGTTTTCCGGATACACTAGTCACAAGTGGAAAACAGACCAATGTTGGTAA 498 0.488 MLATSFSIVTLTTTNFSVESISSLSHHVKLQSTVSFATARWTEKQQQQQHRHVSDLSLHHMASCTTLYEILGIRVTASDEEIKAAYRRLARVYHPDVAPAERKESFTGEFMKIHTAYRTLSDPEKRANYDRSLIRRHQKPLTMSSSSLWGFSGYTSHKWKTDQCW 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01190 165 Gene3D DnaJ domain 52 148 IPR036869 -
Gma16g01190 165 PRINTS DnaJ domain signature 68 86 IPR001623 -
Gma16g01190 165 PRINTS DnaJ domain signature 86 101 IPR001623 -
Gma16g01190 165 PRINTS DnaJ domain signature 105 125 IPR001623 -
Gma16g01190 165 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Gma16g01190 165 SUPERFAMILY Chaperone J-domain 60 145 IPR036869 -
Gma16g01190 165 SMART dnaj_3 65 125 IPR001623 -
Gma16g01190 165 Pfam DnaJ domain 67 130 IPR001623 -
Gma16g01190 165 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 1 165 - -
Gma16g01190 165 CDD DnaJ 66 122 IPR001623 -
Gma16g01190 165 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01190 Gma-Chr16 29505280 29505777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01190 68 130 C2H2 Transcription Factor Family AT1G74250 43.939 5.23e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01190 - - gmx:100809952 337.035