Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01142 ATGGCTGATTCTCCCCTTGCAAGGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGagatctaggtctaggtcaagatctaggtcgaggtcTAGGCCTAGACAAAGGCCAAGATCCCGTTCTAGAAGTCATGGCAGgtcaagatcaccaattcatggaaggtcaaggtcacccattcatggaagGTCCGAGCCTTCAAATCCTGGTGACACACTTTATGTAACCGGTCTATCTTCAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAGGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTATTCACGCCGTAGGTCTCCAAGGCGTTCACCGTACAGAGGTGGCCAAGATTATTCACCCCGGCGCTCACCCTATGGGGGAAGGTCTAGGAGGGATAGCTCTAGGTCGCTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGTGGATCTAGGTGA 723 0.4454 MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRPRQRPRSRSRSHGRSRSPIHGRSRSPIHGRSEPSNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITIERSRRKRARTPTPGHYLGLKNTREYGFRGERGRYRDGPDRDNYSRRRSPRRSPYRGGQDYSPRRSPYGGRSRRDSSRSLPYSPHGSPDRKYARGSR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01142 240 MobiDBLite consensus disorder prediction 1 72 - -
Gma16g01142 240 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 236 - -
Gma16g01142 240 MobiDBLite consensus disorder prediction 148 240 - -
Gma16g01142 240 Gene3D - 8 155 IPR012677 -
Gma16g01142 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Gma16g01142 240 SMART rrm1_1 72 145 IPR000504 GO:0003723
Gma16g01142 240 MobiDBLite consensus disorder prediction 168 192 - -
Gma16g01142 240 SUPERFAMILY RNA-binding domain, RBD 64 179 IPR035979 GO:0003676
Gma16g01142 240 MobiDBLite consensus disorder prediction 1 21 - -
Gma16g01142 240 MobiDBLite consensus disorder prediction 22 56 - -
Gma16g01142 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Gma16g01142 240 CDD RRM_RBMX_like 70 149 - -
Gma16g01142 240 PANTHER RNA RECOGNITION MOTIF 2 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01142 Gma-Chr16 28520698 28523838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01142 70 153 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 1.88e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01142 K12897 - gmx:100499944 375.17