Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01113 ATGACATCCTCATCTACTAGTATAAAAAAAGATGTCTTCATCAGCTTTAGAGGCCCAGATGTTAGGAAAGGTCTACTTAGCCATTTGAAAAAAGAATTGTGTCGCAGGCAGATTGAAGCCTGTGTGGATGAGATACTTGACAGAGGAGATGAAATATCATCCTCACTTCTCAGGGCAATTGAAGAATCACAAATTTTATTGGTCATATTCTCAAAAGACTATGCTTCATCGCAGTGGTGCTTGGAGGAGCTTGCCAAAATGATTGAATGCTTGGAAAGAAACAAACAGATTCTTGTACCTGTTTTTTTTAACGTAGATCCATCAGATGTGCGGCAGCAACACGGAGAATATGGTGATGCTTTAGCTAAACATGAAGAAAAACTCAAGGAAAACATGTTCAAGGTACAAAGTTGGAGATCTGCTTTGAAAAAGGCTGCTAATTTATCAGGGTTTCATTATCCAGGAAATTTTGATGATGAATCTGATCTTGTCGATAAAATCGTAGAAGATATTTCGGAAAAGTTGAGCAAGTCTAGCCCAAGTGAGTCGAATGGTCTGGTTGGAAATGATCAAAACATTGTGCAGATTCAATCCTTATTGCTAAAGGaatcaaatgaagtaatttttgttggaatttggggcatgggtggcataggtaagacaaccattgcccatgctatgtatgataaatattctcctcaatatgagggttgctgcttcttgaatgtaagagaagaagtggaacagcgtggactgagtcatttgcaagagaaacttatatctgaactattggagggagaaggtctccatacaagtggcacaagcaaagcaagattcttcgattctgctgggagaaagatgggtcggaaaaaagttctcgttgtgcttgatgatgtgaatacttcggaacaattgaaatatctggttggcaaaccaatttgctttggtccagggagtagagtgctgataacaagtagagataagcgtgtgcttactagcggaggagtttatcaaattcacaaggtcaaggaaatggaccctagagattccctcaaacttttctgcttaaatgccttcaatgaaagccatcccaaaatgggttatgaaaagctatctgaagaggtagttaaaattgcccagggcaatccattagctttaaaagttttgggtgcagatttccattccagaagtatggacacatgggagtgtgccttaagcaaaatcaagaagtatccaaatgaggaaattcaaagtgttttaagatttagttatgatggactgcatgaagtggagaagaaggcatttctagatattgcattctttttcgaagaagatgacaaagactatgttacaaggaaactggatgcttggggttttcatggagctagtggggtggaggttctccagcaaaaggctctgatcacaatatcagataatagaatacagatgcatgacttgatacgagaaatgggttgtgaaatagttcgtcaagaatctattatatgtccaagaagacgcagccgattgAGGGATAATGAGGAAGTATCCAATGTATTGAGACAAAACCTGGGAACCGATGAGGTGGAGGCCATGCAAATAGATGTGTCTGGAATTAAAAATTTACCTCTGAAATTGGGCACTTTTAAAAAGATGCCTCGTCTGAGATTTCTCAAATTTTATCTCCCATTGCATGCCGAGCTTTCCCTACTGCAAAGCCATGATGGACCTATTTGGTCTCCGGAGAAACAAGATGAGCTACTTTTATCTGCAGGGTGCAAACAACTCATGAGGGTTGCAAGTGAGATTCACATAAAATGTCTTCACTACCTTCTTATTGATGACTGCTCAGATCCTTCACTACTCGATGAACTAACATCAACTGAGATGAGCATGCTGCAAAACATAGCACAAGATGCTGGAGTGGAAATAATATTGAACTCATCCATTGGGCAACTCAGCAGTCTTGAATGCTCAGATGTGGTTGATCAACAATTTAAGAATCTTCCCAATGAGCTACTTTGCTTAAGATGTACATATTACCTTAAGCTTTCTAAGAGCAGGCAACAAGACATCGGGAAACCCAAGCTACATATTCTCTTTGATAGTTTAAGGTATTATCAACGAATATCTGTCAGTCAGTTGTATAAACCAGTTGTCGTATTTCCTCCGAAAAGTCGTGCAGAGATGTGGCTGAAAGGGGCTAAAAAGGAGGTAAAAGGATTTGTCGTTGCCACGTTCTACATACATCTTTACACTGTCCTTTTCTTCTTGTCTCCTTCTACCTTTTCCATCACCATATTTACTCAAACAATCACTTTGTCATTCCTTCTTTTTTGTTGCATTTTACTCTCATTTTTCACAACCCGAGGAGGGATCAAGTTTATGCAAGAGTAA 2394 0.241 MTSSSTSIKKDVFISFRGPDVRKGLLSHLKKELCRRQIEACVDEILDRGDEISSSLLRAIEESQILLVIFSKDYASSQWCLEELAKMIECLERNKQILVPVFFNVDPSDVRQQHGEYGDALAKHEEKLKENMFKVQSWRSALKKAANLSGFHYPGNFDDESDLVDKIVEDISEKLSKSSPSESNGLVGNDQNIVQIQSLLLKESNEVIFVGIWGMGGIGKTTIAHAMYDKYSPQYEGCCFLNVREEVEQRGLSHLQEKLISELLEGEGLHTSGTSKARFFDSAGRKMGRKKVLVVLDDVNTSEQLKYLVGKPICFGPGSRVLITSRDKRVLTSGGVYQIHKVKEMDPRDSLKLFCLNAFNESHPKMGYEKLSEEVVKIAQGNPLALKVLGADFHSRSMDTWECALSKIKKYPNEEIQSVLRFSYDGLHEVEKKAFLDIAFFFEEDDKDYVTRKLDAWGFHGASGVEVLQQKALITISDNRIQMHDLIREMGCEIVRQESIICPRRRSRLRDNEEVSNVLRQNLGTDEVEAMQIDVSGIKNLPLKLGTFKKMPRLRFLKFYLPLHAELSLLQSHDGPIWSPEKQDELLLSAGCKQLMRVASEIHIKCLHYLLIDDCSDPSLLDELTSTEMSMLQNIAQDAGVEIILNSSIGQLSSLECSDVVDQQFKNLPNELLCLRCTYYLKLSKSRQQDIGKPKLHILFDSLRYYQRISVSQLYKPVVVFPPKSRAEMWLKGAKKEVKGFVVATFYIHLYTVLFFLSPSTFSITIFTQTITLSFLLFCCILLSFFTTRGGIKFMQE 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01113 797 SMART till_3 9 148 IPR000157 GO:0007165
Gma16g01113 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 438 IPR027417 -
Gma16g01113 797 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 570 IPR044974 GO:0006952
Gma16g01113 797 Gene3D - 176 339 IPR027417 -
Gma16g01113 797 Pfam TIR domain 11 184 IPR000157 GO:0007165
Gma16g01113 797 ProSiteProfiles TIR domain profile. 8 175 IPR000157 GO:0007165
Gma16g01113 797 PRINTS Disease resistance protein signature 209 224 - -
Gma16g01113 797 PRINTS Disease resistance protein signature 286 300 - -
Gma16g01113 797 PRINTS Disease resistance protein signature 379 393 - -
Gma16g01113 797 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Gma16g01113 797 Pfam NB-ARC domain 191 425 IPR002182 GO:0043531
Gma16g01113 797 Gene3D - 3 175 IPR035897 -
Gma16g01113 797 PANTHER NB-ARC DOMAIN PROTEIN 8 570 - -
Gma16g01113 797 SUPERFAMILY "Winged helix" DNA-binding domain 415 499 IPR036390 -
Gma16g01113 797 Gene3D - 345 428 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01113 Gma-Chr16 27965018 27968610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01113 5 560 WRKY Transcription Factor Family AT4G12020 32.562 1.26e-64 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01113 - - gmx:100305455 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01113 16 27965018 27968610 Gma02g00381 02 3983901 3987227 GST