LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g01110	ATGCCGATGGAACTGGAGTTGGAGCTAGGTTCAACAACAATTCAACGTTCCTTCGACGCGCGCTACACGCGCCACACACGTGACTTGCTTGACGAATTGCCTGACAGCTTCACCGTCACCGACCCCTCCATCCTGGGACACCCCATCGTGTTTGCCAGCCCAGGCTTCCTCAAGCTCACGGGCTATTCCCTTCGCGAAGTCCTGGGTCGGCCCACAGCCATCTTCCAGGGCCCACTAACATTCCCAAAATCCGTAATTGAAATTCGCAAGGTTGTTAGAGAGGAGCGAAACGCGCAGGTCATTTTACCCAAAATCTGTCGTGCACTTTGTTGCCGTATAGGTACCACTTCAGAAAAAGGAAGGGTCCGGGGTGAGGGATTTCGGGTTTGA	390	0.5385	MPMELELELGSTTIQRSFDARYTRHTRDLLDELPDSFTVTDPSILGHPIVFASPGFLKLTGYSLREVLGRPTAIFQGPLTFPKSVIEIRKVVREERNAQVILPKICRALCCRIGTTSEKGRVRGEGFRV	129

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g01110	129	ProSiteProfiles	PAS repeat profile.	22	99	IPR000014	-
	Gma16g01110	129	PANTHER	PROTEIN TWIN LOV 1	11	102	-	-
	Gma16g01110	129	Gene3D	PAS domain	19	108	-	-
	Gma16g01110	129	CDD	PAS	33	75	IPR000014	-
	Gma16g01110	129	PANTHER	PROTEIN TWIN LOV 1-LIKE	11	102	-	-
	Gma16g01110	129	SUPERFAMILY	PYP-like sensor domain (PAS domain)	32	101	IPR035965	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g01110	Gma-Chr16	27937693	27938082	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma16g01110	21	94	AGC Kinase Gene Family	AT5G58140	37.838	3.43e-10	54.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g01110	-		-	gmx:100776985	259.996

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