Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01107 ATGGGAGGTGACAGTGCCATTGAGGAATCCGAAGGGGTCAACGTCAACATCAACGTTCGCTGCTCCAACGGTTTCAAGTTTTCCGTTCAGATTGCCGTCGATTCCACCGTTAGTTCCTTCAAGGACGTTGTCGCTCGCAACTGCGACATCCCTGCCGAACAACAGCGCCTCATTTACAAGGGTCGCATCTTGAAGGATGATCAAACCCTACGAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTCTGCTCCTGCCAATCCAACTGGTGGGACCAATACTAGTAGCACCAATACCAATACCACAACAAATAATGCTAGAGGTGCTGGTGCCAATGAAGGTGGGGGCTTAGGAGGGCTTGGTTTTGGAGCTTCACTATTCCCTGGGCTAGGTGTCAATGGGACTGGGGGCAATGGTTTATTTGGTGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCCTTTATTTCTAATCCCAATTTAGTGAGAGAAATAATGAATTCACCCACCATGCAGAATCTAATGAATAATCCTGAAATAGTACGGAATCTTATAATGAATAATCCGCAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAGTTTCAGGGACTCATGGTGGCCATGCAAGGGACCGATCAACAAATCCCTCCACCACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAACTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGTGGGCTTGGTCTGCCAGACCTTGAAAGCATGATGGGTGGTAGTGCTATGCCAGATGCTGCTTTATTGACCCAGCTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGGGAATCTGGTCAAACTGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAG 1626 0.4705 MGGDSAIEESEGVNVNINVRCSNGFKFSVQIAVDSTVSSFKDVVARNCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGSAPANPTGGTNTSSTNTNTTTNNARGAGANEGGGLGGLGFGASLFPGLGVNGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPTMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAVSGTHGGHARDRSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNPRRSLTTGVDARQQGPTGLGGLGLPDLESMMGGSAMPDAALLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTRESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01107 541 MobiDBLite consensus disorder prediction 267 353 - -
Gma16g01107 541 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 541 - -
Gma16g01107 541 SMART CBM 192 231 IPR006636 -
Gma16g01107 541 SMART CBM 400 435 IPR006636 -
Gma16g01107 541 SMART CBM 344 397 IPR006636 -
Gma16g01107 541 SMART CBM 138 179 IPR006636 -
Gma16g01107 541 Gene3D - 11 99 - -
Gma16g01107 541 MobiDBLite consensus disorder prediction 90 113 - -
Gma16g01107 541 CDD Ubl_Dsk2p_like 15 87 - -
Gma16g01107 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Gma16g01107 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Gma16g01107 541 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Gma16g01107 541 PANTHER UBIQUILIN 9 541 - -
Gma16g01107 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Gma16g01107 541 MobiDBLite consensus disorder prediction 267 342 - -
Gma16g01107 541 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Gma16g01107 541 MobiDBLite consensus disorder prediction 446 464 - -
Gma16g01107 541 MobiDBLite consensus disorder prediction 85 116 - -
Gma16g01107 541 MobiDBLite consensus disorder prediction 446 466 - -
Gma16g01107 541 CDD UBA_PLICs 499 537 - -
Gma16g01107 541 Gene3D - 481 541 - -
Gma16g01107 541 SUPERFAMILY Ubiquitin-like 13 102 IPR029071 -
Gma16g01107 541 SMART uba_6 499 537 IPR015940 -
Gma16g01107 541 SMART ubq_7 15 86 IPR000626 GO:0005515
Gma16g01107 541 Gene3D - 187 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01107 Gma-Chr16 27878994 27893676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01107 15 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 4.79e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01107 K04523 - gmx:100776447 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01107 16 27878994 27893676 Gma02g00380 02 3970822 3977430 GST
Gma01g01634 01 52048795 52054721 Gma16g01107 16 27878994 27893676 PCT
Gma11g00774 11 6467128 6472259 Gma16g01107 16 27878994 27893676 PCT
Gma16g01107 16 27878994 27893676 Gma01g01634 01 52048795 52054721 PCT
Gma16g01107 16 27878994 27893676 Gma11g00774 11 6467128 6472259 PCT