Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01100 ATGGGTGTCTGCTTCTCCTCTGGCCCGACACAGCACTCTTCTTCCCTCGATCGACCTCACTATTCAGGTTCAGCAAGCACTAACTGCAAAAACGTGGGAATCACCAAAACCACGAGCAGCAGCACCGAAAATAGACAGTTTACCGTGATTGCGAGTGGAAGCATCGACGACGAAGAATCTATTCATTATCTTCTTCGTCGTGTATATCATCGTCCCCTTCGTCTTCCTCTTCCTCCACCGGATGGTCAGATTCTGAAATGGCCAAACTTGAAGGTTTTCGATTTTGAGGAGTTGAAATCTGCCACAAACAATTTCAGCTCTGACACATTGCTGGGTGAAGGTGGCTTTGGCAGAGTTTACAAGGGATGGTTGGATGGGGATACCCTCGCCCCTACCAAAGCAGGCTCCGGAATGGTCGTAGCCATAAAATGGTTGAACCCCCAAAGCACGCAAGGGTTTGACCAGTGGCAGACAGAACTAAACATTATGAGAAGGTTTTCTCACCCCAACCTGGTCAATTTATTGGGTTACTGTTGGGACGATGATGAGCATCTTCTTGTGTATGAGTTCATGCCAAAGAGAAGCTTAGACAATCATCTATTCAAAAGAAATCGTAACTTAGGATTTCTTTCTTGGAACACACGGCTTAAAATAGCTATTGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCTTCTGAAAACAACATCATTCACAGAGATTTCAAGTCCTCAAATATACTACTTGATGGAaattacaatccaaagatctcagattttggcttggcaacattggtgtcttatgagggacaatcccacaattacagtccagagatctcagattttgacttggcgaaatgggggccttctgagggagaatcacatgtaactaccagggtcatgggcacggttggttatgcagctccagaatacgtagcaaCAGGCCACTTGTATGTGAAGAGTGATGTCTATGGATTTGGTGTAGTGCTGCTTGAAATACTTACAGGCATGCGGGCACTTGACACAAATCGGCCAACAGGGCAGCAGAACCTAGTTGAATGGACCAAGCCTCTTCTCTCTTCCAAGAAAAAGTTGAAAACAATAATGGATGCTAAGATAGTGGGTCAATATTCACTTCAGGCAGCATGGCAAGCAGCACAACTTACTATGAAATGCCTACAATCTATCCCTGAAGAACGTCCTTCTATGAAAGATGTAGTTGAGGCATTGGAAGCCATTGAAGCTATCCAAAATTAg 1254 0.3796 MGVCFSSGPTQHSSSLDRPHYSGSASTNCKNVGITKTTSSSTENRQFTVIASGSIDDEESIHYLLRRVYHRPLRLPLPPPDGQILKWPNLKVFDFEELKSATNNFSSDTLLGEGGFGRVYKGWLDGDTLAPTKAGSGMVVAIKWLNPQSTQGFDQWQTELNIMRRFSHPNLVNLLGYCWDDDEHLLVYEFMPKRSLDNHLFKRNRNLGFLSWNTRLKIAIGAARGLAFLHASENNIIHRDFKSSNILLDGNYNPKISDFGLATLVSYEGQSHNYSPEISDFDLAKWGPSEGESHVTTRVMGTVGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGMRALDTNRPTGQQNLVEWTKPLLSSKKKLKTIMDAKIVGQYSLQAAWQAAQLTMKCLQSIPEERPSMKDVVEALEAIEAIQN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01100 417 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 44 272 - -
Gma16g01100 417 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 273 415 - -
Gma16g01100 417 ProSitePatterns Protein kinases ATP-binding region signature. 111 143 IPR017441 GO:0005524
Gma16g01100 417 ProSiteProfiles Protein kinase domain profile. 105 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01100 417 Pfam Protein kinase domain 107 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01100 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Gma16g01100 417 PANTHER OS01G0588500 PROTEIN-RELATED 273 415 - -
Gma16g01100 417 PANTHER OS01G0588500 PROTEIN-RELATED 44 272 - -
Gma16g01100 417 Gene3D Phosphorylase Kinase; domain 1 80 190 - -
Gma16g01100 417 Gene3D Transferase(Phosphotransferase) domain 1 191 417 - -
Gma16g01100 417 SUPERFAMILY Protein kinase-like (PK-like) 84 410 IPR011009 -
Gma16g01100 417 CDD STKc_IRAK 111 412 - -
Gma16g01100 417 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01100 Gma-Chr16 27800319 27803696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01100 91 409 Glycoside Hydrolase AT3G07070 44.375 2.50e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma16g01100 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01100 - - gmx:100820454 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00780 11 6515596 6519740 Gma16g01100 16 27800319 27803696 PCT
Gma16g01100 16 27800319 27803696 Gma11g00780 11 6515596 6519740 PCT