Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01093 ATGGGTCTCTGCTTCTCCTCCTCTTCATCCACACCTCACTCCTCTTCCCTCAACCGCCCTCAGCAGTACTCAGGCTCAGCGAGCACTGACACCAAGAACGTGGGATTCTCCGCGACCACGAGCAGCGCCGGGAAGAGCCAATTCTCGGAGATCGCGAGTGGGAGCATCAACAGCAGCCAAGGCTCTCTTCCTCTTCCTCTTCCTTCTCCCGATGGCCAGATTCTAGAAAGGCCGAACCTGAAGGTGTTCAGCTTCGGAGACCTGAAATCTGCCACCAAGAGTTTCAAGTCCGATACATTGCTCGGTGAAGGCGGGTTCGGAAGAGTTTACAAGGGATGGTTGGATGAGAAGACCCTCTCCCCGGCCAAAGCAGGCTCCGGAATGGTCGTTGCCATCAAAAAGTTGAACCCCGAAAGCACGCAAGGCTTCCAAGAGTGGCAGTCAGAAGTGAACTTTTTAGGAAGGCTTTCTCACCCCAACCTGGTCAAGTTGTTGGGTTATTGTTGGGACGATGATGAGCTTCTTCTTGTTTATGAATTCTTGCCAAAGGGAAGCTTGGAGAATCATCTTTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCTCCGAAAAGCAAGTCATATACCGAGACTTCAAGGCCTCAAATATACTTCTCGATTTGAATTTCAATGCAAAAATCTCAGATTTTGGCTTGGCGAAATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGTACGTATGGTTATGCTGCTCCAGAATACATAGCAACAGGCCACTTGTATGTGAAGAGTGATGTCTACGGATTTGGCGTAGTGCTACTTGAAATACTGACAGGCATGCGGGCACTTGACACAAAACGGCCAACAGGGCAGCAGAACCTAGTTGAATGGACCAAGCCTCTTCTCTCTTCCAAGAAAAAGTTGAAAACAATAATGGATGCTAAGATAGTGGGTCAATATTCACCAAAGGCAGCGTTTCAAGCAGCACAACTTACTGTAAAATGTCTAGAACATGACCCCAAACAACGTCCTTCCATGAAAGAAGTGCTTGAGGGATTGGAAGCCATTGAAGCTATCCATGAAAAATCCAAGGAATCCAAAACCCGCAATTCTTATCAATCTCCTCGGCAGAGAGTTGTGAGAGTATAA 1221 0.4791 MGLCFSSSSSTPHSSSLNRPQQYSGSASTDTKNVGFSATTSSAGKSQFSEIASGSINSSQGSLPLPLPSPDGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLSPAKAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDLNFNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTKRPTGQQNLVEWTKPLLSSKKKLKTIMDAKIVGQYSPKAAFQAAQLTVKCLEHDPKQRPSMKEVLEGLEAIEAIHEKSKESKTRNSYQSPRQRVVRV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01093 406 Pfam Protein tyrosine and serine/threonine kinase 98 376 IPR001245 GO:0004672|GO:0006468
Gma16g01093 406 MobiDBLite consensus disorder prediction 1 42 - -
Gma16g01093 406 MobiDBLite consensus disorder prediction 386 406 - -
Gma16g01093 406 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 46 391 - -
Gma16g01093 406 Gene3D Phosphorylase Kinase; domain 1 79 180 - -
Gma16g01093 406 ProSitePatterns Protein kinases ATP-binding region signature. 101 134 IPR017441 GO:0005524
Gma16g01093 406 PANTHER OS01G0588500 PROTEIN-RELATED 46 391 - -
Gma16g01093 406 SUPERFAMILY Protein kinase-like (PK-like) 74 378 IPR011009 -
Gma16g01093 406 Gene3D Transferase(Phosphotransferase) domain 1 181 403 - -
Gma16g01093 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Gma16g01093 406 ProSiteProfiles Protein kinase domain profile. 95 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01093 406 CDD STKc_IRAK 101 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01093 Gma-Chr16 27660656 27665645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01093 71 377 Glycoside Hydrolase AT3G07070 50.325 3.29e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma16g01093 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01093 - - gmx:100794193 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01093 16 27660656 27665645 Gma16g01093 16 27660656 27665645 ECH