Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01092 ATGTTTCCAGGTTTTCAAGTCAGAGTTATGTTTCTAGGAGGAGAAACCATGCTTACTAGACTTAATGGTCTATGCAGGTGTCAAAGCTTAATGAAAAGTGTGATTCTCTTCAAAGGCGGTAATCCACTTGAAATAGATTTATCAAAAGCTAGGCAAAGGAAGCTGTTCTGTTGTTTAGGATTTTGGCGTGAGACTGTGGTTTCCAAATTGGAAGGTCTATGTAATTTTATGGCGAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCATCGATCTTTGGTTCGTTGGGACTCCTAACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCAAGAACTTTCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGATATTATTGGGGTCATTGATCAGGTGGTCTTTCAGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTGCTCAGTTCCTATCCTATTTGAATGAACGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTTAAAACTATTGATTAATGATCCTATATTAGAAATTCAGGAATTTAAAGAGAGCTCACAAGTTTCAAGGGGGAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGTTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGCTGTTTGTGTTACCGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTATTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGACAAGGATAATGATCAACCTGTTCTAAGGTATAGAGTTGAGGTCATGGTTACACAAAACAATGAGAGTGGCAAATTTTTGCTCTGGGACCGTGAATGTGCTAAATTGATTGGCCAAACAGCTGATGGTGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTTCCCTCATGCACTCGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAGATTAAAAAATGTAGTTGTACTTAAATACTCAAAAGACCTGGATTTGATCAATGTTGTTCTGGAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATGCTTCCAATGTTGATTGCAATGATGCTACGCATGCTGAATGTTTCCCACGCGATACAATAGACAACATAAGATTCACCGCACCTTTCAGAGTTCAAAAGAACCTTCTCCAAGTTCCTTTTACCTATCACAGGCAATGGCTGCGCAACTACCCCAGATACGTTTTATTCCACTACGATGGCGAGATACATTTCATTAGGACACTTCCTGCAACGGCTTCCAAATTTGTGTATGGCTCCAAAAAAAGTATTACCATCCACCACGGACTTTCAAAATCCACCAAATGGCCACTCACCATCCACCATGATGTCCCTGCCATTACACAACCATGGTTCAACCTGATTCATGAAAAAAATTTAAAAGTCGGAGATGAGGTAGTCTTTTACTACCGTTTTCATGACCATGCATGGGAGCTGCTGATAAGGAAAGCCATCGAATGGAACAACAGCAACACCGACCCCGACTCTGATGATTAA 1920 0.3948 MFPGFQVRVMFLGGETMLTRLNGLCRCQSLMKSVILFKGGNPLEIDLSKARQRKLFCCLGFWRETVVSKLEGLCNFMARIPDKIRSIDGSKETLKLAVRIIDLWFVGTPNKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREADLQELSFKEFRFVEFANVVAGNFVSGLLVDIIGVIDQVVFQHVSSKNTRVVFRMKDLSGEILSCTLWENYCAQFLSYLNERSYPASVSNSFKALKLLINDPILEIQEFKESSQVSRGSQLSSKDSFLSKVEAKTILEINAISEDAVCVTVGTISKIVMDNHSWYYPACAQCHRKTDIQTGPFTCGCDKDNDQPVLRYRVEVMVTQNNESGKFLLWDRECAKLIGQTADGVNRVKIEDGDLDLNAFPHALDKLLGHVLAFKVRIQSRLKNVVVLKYSKDLDLINVVLEMLPDSEACSKIDASNVDCNDATHAECFPRDTIDNIRFTAPFRVQKNLLQVPFTYHRQWLRNYPRYVLFHYDGEIHFIRTLPATASKFVYGSKKSITIHHGLSKSTKWPLTIHHDVPAITQPWFNLIHEKNLKVGDEVVFYYRFHDHAWELLIRKAIEWNNSNTDPDSDD 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01092 639 CDD RPA1_DBD_B_like 213 294 - -
Gma16g01092 639 Pfam Domain of unknown function DUF223 116 203 IPR003871 -
Gma16g01092 639 CDD RPA1_DBD_C 312 462 IPR013955 -
Gma16g01092 639 Gene3D - 189 299 IPR012340 -
Gma16g01092 639 Gene3D - 82 182 IPR012340 -
Gma16g01092 639 CDD RPA1_DBD_A_like 95 180 - -
Gma16g01092 639 Gene3D - 300 464 IPR012340 -
Gma16g01092 639 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 87 429 - -
Gma16g01092 639 PANTHER REPLICATION FACTOR A 1, RFA1 87 429 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma16g01092 639 SUPERFAMILY Nucleic acid-binding proteins 316 451 IPR012340 -
Gma16g01092 639 SUPERFAMILY Nucleic acid-binding proteins 84 182 IPR012340 -
Gma16g01092 639 Pfam Replication factor-A C terminal domain 334 447 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01092 Gma-Chr16 27646205 27654950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01092 119 424 Core DNA Replication Machinery Family AT5G08020 21.368 1.69e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01092 - - gmx:102661204 722.235