Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01082 ATGATATCCTCATCTTTTTCAGGGTCAGCTAAGAGAGCTCCTTCCTTTAACAACGAGACACAAATAGTGTTATGCCTTGTGGACGGGTGCCACTCTGATCTCAGTAACTGCAAAGACTATCATAGACGCCATAAGGTCCGTGAAGTCCATTCCAAGACTACACAGGTCACAATTGGAGAAGAAAAGAATAATTTTACCTACAATGTTCGTTCTGTGGATGAAAGAAATAACAAGTACAACTCCAAAAGCTGCAGCAACGGAGCTTCATCAACAACAACACAAATAATAATCACTAAGAACAAAGGGGTAATTGCCAATAGGCTCACTCACCTCTGA 336 0.4107 MISSSFSGSAKRAPSFNNETQIVLCLVDGCHSDLSNCKDYHRRHKVREVHSKTTQVTIGEEKNNFTYNVRSVDERNNKYNSKSCSNGASSTTTQIIITKNKGVIANRLTHL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01082 111 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 66 IPR044817 GO:0003677
Gma16g01082 111 SUPERFAMILY SBT domain 23 67 IPR036893 GO:0003677|GO:0005634
Gma16g01082 111 ProSiteProfiles Zinc finger SBP-type profile. 22 98 IPR004333 GO:0003677
Gma16g01082 111 Gene3D - 16 85 IPR036893 GO:0003677|GO:0005634
Gma16g01082 111 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 2 66 - -
Gma16g01082 111 Pfam SBP domain 25 74 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01082 Gma-Chr16 27324046 27324717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01082 21 65 SBP-box Gene Family AT5G50670 62.222 1.54e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma16g01082 SBP 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01082 - - gmx:100805328 105.145