Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01070 ATGAGTCATGCAAAAGAGAATGAGGAAGCAGGGCAGAATGTACCCTTGGCTTTGGAAGAAACTCAGCAGTTAGTTGAAGCACAGATTCAACCAGAAGATTTGGCTGCTCCTGTGTCCACAGGGGGTACTTCAAATCATGTTGAAAACGGGAAAGTAGAGGTAGAGGCACGCGTGGAGGATAAAATTGTGAAACCAGAAGCGGATTCAGAGTGCATTCCACTACAAGATGTCCTAAATAGTATAAATACTCTTCACTCAGTCCCCGTAATGGACGATGCTCAAGTTTTAAATAACGCAGAAGGCGAATATGTGTCAGATGTGAAGAGCAAAGCTGAAGAAGCTCTGCAGTGTGAGAGGGGCATCAAGAATGATGCTAATGTTTGTCAAATCAATGCTGATACTGCTGAAACCACTGTGGCGGTGAGTCCCAAGGCTTTTGAGGCAGCTGATAGTAAAACTTGTGATAATGGTGACTCCAACTCCATATGCCCTAGTCATAATGAGCCTAATACACCACATGCCGTTCCTGCTGATGTAAGACCTGAAATCAAGAGTGGATTAGACAATGAGAATAGGGATAATGAAAAGCAGGCTGCTGCTGCACGTGCAGATAATGGAAACTCAATCTCAAAGAACTTGTACTTTTTGGATCCTGATGATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAGTTATGGAGATCTGTACACAGATTGGGCGGCTATGACAAGGTTACCTCATGTAAATTCTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACAACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTACGAAAGGCATACAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTCCTCTTGCAGAGCCAATAAATATTGAAAATCAGTCTGTCCAGGGTTCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGGATAGGAATTCTTTGTCTATGCAAAAGCGTGAAAAACAACTTAAAAACATCAATTTACTTAAACGCAAGAAATCATCGGACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAGTTAAGACACATATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGCGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTCAGCTTGCCTTCAAGAATTGATACTCAGCAGACGTCGGCTGTGGTGACCTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGAGCAATCAAAATAGAGAAGGCTGA 1611 0.4351 MSHAKENEEAGQNVPLALEETQQLVEAQIQPEDLAAPVSTGGTSNHVENGKVEVEARVEDKIVKPEADSECIPLQDVLNSINTLHSVPVMDDAQVLNNAEGEYVSDVKSKAEEALQCERGIKNDANVCQINADTAETTVAVSPKAFEAADSKTCDNGDSNSICPSHNEPNTPHAVPADVRPEIKSGLDNENRDNEKQAAAARADNGNSISKNLYFLDPDDSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEELNCLKLWRSVHRLGGYDKVTSCKFWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHTTKGGELNVPITPLAEPINIENQSVQGSASSGRARRDAAARAMQGWHSQRLLSNGEFSDPIIKDRNSLSMQKREKQLKNINLLKRKKSSDTVNVVKVAHSQPSRPQLRHISDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPFESNQNREG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01070 536 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 432 536 IPR002068 -
Gma16g01070 536 SUPERFAMILY ARID-like 225 330 IPR036431 GO:0003677
Gma16g01070 536 Gene3D - 422 535 IPR008978 -
Gma16g01070 536 SMART bright_3 231 322 IPR001606 GO:0003677
Gma16g01070 536 CDD ACD_sHsps_p23-like 451 527 - -
Gma16g01070 536 Pfam Hsp20/alpha crystallin family 449 532 IPR002068 -
Gma16g01070 536 MobiDBLite consensus disorder prediction 184 199 - -
Gma16g01070 536 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 29 530 - -
Gma16g01070 536 ProSiteProfiles ARID domain profile. 230 321 IPR001606 GO:0003677
Gma16g01070 536 MobiDBLite consensus disorder prediction 153 168 - -
Gma16g01070 536 MobiDBLite consensus disorder prediction 150 178 - -
Gma16g01070 536 MobiDBLite consensus disorder prediction 184 203 - -
Gma16g01070 536 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 29 530 IPR045147 GO:0006357
Gma16g01070 536 CDD ARID 232 317 - -
Gma16g01070 536 Gene3D - 230 328 IPR036431 GO:0003677
Gma16g01070 536 SUPERFAMILY HSP20-like chaperones 441 528 IPR008978 -
Gma16g01070 536 Pfam ARID/BRIGHT DNA binding domain 233 317 IPR001606 GO:0003677
Gma16g01070 536 SMART ARID_2 227 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01070 Gma-Chr16 26930609 26938413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01070 214 529 ARID Transcription Factor Family AT1G76510 60.252 7.65e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma16g01070 HSP20 2.1e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01070 - - gmx:100803374 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01070 16 26930609 26938413 Gma16g01070 16 26930609 26938413 ECH